View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_433 (Length: 227)
Name: NF8260A_low_433
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_433 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 21 - 227
Target Start/End: Complemental strand, 2626561 - 2626355
Alignment:
| Q |
21 |
ggggacattagaccaaacccttagcactaagaacacaatctaaattagagaagacccatcctgtttctagtaaaatcatttctaatttgagtaggaaggc |
120 |
Q |
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| T |
2626561 |
ggggacattagaccaaaaccttagcactaagaacataatctaaattagggaagacccatcctgtttctagtaaaatcatctctaatttgagtaggaaggt |
2626462 |
T |
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| Q |
121 |
gatcccaccaaaaatgagtagtgagttctaagccaataccaactaccttatcagcacaatggttcccatctctataaatatgagaaacactaaaagccat |
220 |
Q |
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| T |
2626461 |
gatcccaccaaaaatgagtagtgagttctaagccaatgccaactaacttatcagcacaatggttctcatctctataaatatgagaaacaataaaaggcat |
2626362 |
T |
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| Q |
221 |
tgaggag |
227 |
Q |
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||||||| |
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| T |
2626361 |
tgaggag |
2626355 |
T |
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Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 70 - 226
Target Start/End: Complemental strand, 18285929 - 18285773
Alignment:
| Q |
70 |
gaagacccatcctgtttctagtaaaatcatttctaatttgagtaggaaggcgatcccaccaaaaatgagtagtgagttctaagccaataccaactacctt |
169 |
Q |
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| T |
18285929 |
gaagacccatcctatttctaacaaaatcttctctaatctgagaaggaagggaatcccaccaaaaataagagctaagttctaaaccaatgctaacaagctt |
18285830 |
T |
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| Q |
170 |
atcagcacaatggttcccatctctataaatatgagaaacactaaaagccattgagga |
226 |
Q |
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| T |
18285829 |
atcagcacaatgatttccttctctataaatatgagtaaccataaaagacattgagga |
18285773 |
T |
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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 70 - 226
Target Start/End: Complemental strand, 12947102 - 12946946
Alignment:
| Q |
70 |
gaagacccatcctgtttctagtaaaatcatttctaatttgagtaggaaggcgatcccaccaaaaatgagtagtgagttctaagccaataccaactacctt |
169 |
Q |
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||||||||||||| |||||| |||||| | |||||| |||| | ||||| |||||||||||||| || | |||||||| ||||| | ||| | ||| |
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| T |
12947102 |
gaagacccatcctatttctaacaaaatcttctctaatctgagaaagaagggaatcccaccaaaaataagagctaagttctaaaccaatgcaaacaagctt |
12947003 |
T |
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| Q |
170 |
atcagcacaatggttcccatctctataaatatgagaaacactaaaagccattgagga |
226 |
Q |
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| T |
12947002 |
atcagcacaatgatttccttctctataaatatgagtaaccataaaagacattgagga |
12946946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 184
Target Start/End: Original strand, 15907210 - 15907349
Alignment:
| Q |
48 |
taagaacacaatctaaattagagaagacccatcctgtttctagtaaaatcatttctaatt---tgagtaggaaggcgatcccaccaaaaatgagtagtga |
144 |
Q |
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|||||||| |||||| | || |||| |||| |||||||||||||||||| | ||||||| ||| ||||||| |||||||||||| |||||| ||| |
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| T |
15907210 |
taagaacaaaatctataacagggaaggcccaacctgtttctagtaaaatcgtatctaattatctgatgaggaagggaatcccaccaaaattgagtattga |
15907309 |
T |
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| Q |
145 |
gttctaagccaataccaactaccttatcagcacaatggtt |
184 |
Q |
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| T |
15907310 |
gatctaagccaatgccaacaagcttatcagcacagtggtt |
15907349 |
T |
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