View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_442 (Length: 226)
Name: NF8260A_low_442
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_442 |
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Alignment Details
Target: chr6 (Bit Score: 159; Significance: 8e-85; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 5 - 219
Target Start/End: Original strand, 7322787 - 7323001
Alignment:
| Q |
5 |
catagcctggatttgtgtattgttccagtccattttagtgcacacgtagtgctcttactcattgaaggtgtttggactgcaaatattcatgatcgaattc |
104 |
Q |
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| T |
7322787 |
catagcctggctttgtttattgttccagtccattttatcgcacacttagtgctcttattcattgaaggtgtttggaccgcaaatattcatgattgcattc |
7322886 |
T |
|
| Q |
105 |
atggaaaattgtggcctattatgggagctggttaccacaccattcatcatacgacatatcggcataactatggtcattacacaatatggatggattggat |
204 |
Q |
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| T |
7322887 |
acggaaaactttggcctgttatgggagctggttaccacaccattcatcatacgacatatcggcataactatggtcattacacaatatggatggattggat |
7322986 |
T |
|
| Q |
205 |
gttcgatattcttcg |
219 |
Q |
| |
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|||||||| |||||| |
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| T |
7322987 |
gttcgatactcttcg |
7323001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 5 - 219
Target Start/End: Original strand, 7284882 - 7285096
Alignment:
| Q |
5 |
catagcctggatttgtgtattgttccagtccattttagtgcacacgtagtgctcttactcattgaaggtgtttggactgcaaatattcatgatcgaattc |
104 |
Q |
| |
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||||| |||| ||||| |||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| | |||| |
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| T |
7284882 |
catagtctggctttgtttattgttccagtccattttatcgcacacttagtgctcttattcattgaaggtgtttggaccgcaaatattcatgattgcattc |
7284981 |
T |
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| Q |
105 |
atggaaaattgtggcctattatgggagctggttaccacaccattcatcatacgacatatcggcataactatggtcattacacaatatggatggattggat |
204 |
Q |
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| T |
7284982 |
acggaaaactttggcctgttatgggagctggttaccacaccattcatcatacgacatatcggcataactatggtcattacaccatatggatggattgggt |
7285081 |
T |
|
| Q |
205 |
gttcgatattcttcg |
219 |
Q |
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||||| || |||||| |
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| T |
7285082 |
gttcggtactcttcg |
7285096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 5 - 219
Target Start/End: Original strand, 7307282 - 7307496
Alignment:
| Q |
5 |
catagcctggatttgtgtattgttccagtccattttagtgcacacgtagtgctcttactcattgaaggtgtttggactgcaaatattcatgatcgaattc |
104 |
Q |
| |
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||||||||| ||||| ||| |||||||||||||||| || |||| ||||||||||| |||||||| | | ||| || |||||||||||||| | |||| |
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| T |
7307282 |
catagcctgactttgtttatcgttccagtccattttaatgtacacttagtgctcttattcattgaaattatatggtcttcaaatattcatgattgtattc |
7307381 |
T |
|
| Q |
105 |
atggaaaattgtggcctattatgggagctggttaccacaccattcatcatacgacatatcggcataactatggtcattacacaatatggatggattggat |
204 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| | |||||||| ||||||||||| ||||||||||||||||| |
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| T |
7307382 |
atggaaaattgtggccttttatgggagctggttaccacaccattcatcatacaacatattgtcataactacggtcattacaccatatggatggattggat |
7307481 |
T |
|
| Q |
205 |
gttcgatattcttcg |
219 |
Q |
| |
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||| ||| |||||| |
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|
| T |
7307482 |
tttcaatactcttcg |
7307496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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