View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8260A_low_453 (Length: 225)

Name: NF8260A_low_453
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8260A_low_453
NF8260A_low_453
[»] chr1 (6 HSPs)
chr1 (22-205)||(34366865-34367044)
chr1 (77-115)||(28259953-28259991)
chr1 (54-115)||(46443152-46443213)
chr1 (63-115)||(5562858-5562910)
chr1 (79-111)||(26095053-26095085)
chr1 (87-115)||(28750271-28750299)
[»] chr8 (5 HSPs)
chr8 (85-115)||(15890254-15890284)
chr8 (77-115)||(32723920-32723958)
chr8 (77-115)||(32974067-32974105)
chr8 (87-115)||(23678506-23678534)
chr8 (87-115)||(45184229-45184257)
[»] chr7 (2 HSPs)
chr7 (77-115)||(40081685-40081723)
chr7 (87-115)||(26626287-26626315)
[»] chr6 (3 HSPs)
chr6 (77-115)||(18328064-18328102)
chr6 (87-115)||(25059540-25059568)
chr6 (87-115)||(30579311-30579339)
[»] chr3 (3 HSPs)
chr3 (77-115)||(46175821-46175859)
chr3 (87-115)||(9557599-9557627)
chr3 (87-115)||(24681660-24681688)
[»] chr2 (3 HSPs)
chr2 (77-115)||(5288374-5288412)
chr2 (87-115)||(11723424-11723452)
chr2 (87-115)||(41974457-41974485)
[»] chr4 (3 HSPs)
chr4 (62-115)||(4479347-4479400)
chr4 (87-115)||(2251544-2251572)
chr4 (51-115)||(44886669-44886733)
[»] chr5 (5 HSPs)
chr5 (87-115)||(7948989-7949017)
chr5 (87-115)||(19089290-19089318)
chr5 (87-115)||(21071485-21071513)
chr5 (87-115)||(30187942-30187970)
chr5 (87-115)||(39084634-39084662)


Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 22 - 205
Target Start/End: Original strand, 34366865 - 34367044
Alignment:
Q  22 acgtaagatatataattacttgtcttaatggattaaatatatttttcgtctctgcaaatatataaagttttgtttttagttcctacaaaataaataaatt 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||    |||||    
T  34366865 acgtaagatatataattacttgtcttaatggattaaatatatttttcgtctctacaaatatatacagtttcgtttttagttcctacaaaat----aaatt 34366960  T
Q  122 gttcaaattttagtccttgataactataatgccatgtctacctggcaagtgtcatgtgattgattgatataaaatttggcttga 205  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34366961 gttcaaattttagtccttgataactataacgccatgtctgcctggcaagtgtcatgtgattgattgatataaaatttggcttga 34367044  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 115
Target Start/End: Complemental strand, 28259991 - 28259953
Alignment:
Q  77 aaatatataaagttttgtttttagttcctacaaaataaa 115  Q
    |||||| || |||||||||||||||||||||||||||||    
T  28259991 aaatatttacagttttgtttttagttcctacaaaataaa 28259953  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 46443213 - 46443152
Alignment:
Q  54 ttaaatatatttttcgtctctgcaaatatataaagttttgtttttagttcctacaaaataaa 115  Q
    |||||||| |||||||||| |  ||||||||||| |||| |||||| ||| |||||||||||    
T  46443213 ttaaatatgtttttcgtctttataaatatataaaattttatttttacttcatacaaaataaa 46443152  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 5562910 - 5562858
Alignment:
Q  63 tttttcgtctctgcaaatatataaagttttgtttttagttcctacaaaataaa 115  Q
    ||||| ||||||  |||||| || ||||||||||||||| |||||||||||||    
T  5562910 tttttagtctctataaatatttacagttttgtttttagtccctacaaaataaa 5562858  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 111
Target Start/End: Original strand, 26095053 - 26095085
Alignment:
Q  79 atatataaagttttgtttttagttcctacaaaa 111  Q
    |||| ||||||||||||||||||||||||||||    
T  26095053 atatctaaagttttgtttttagttcctacaaaa 26095085  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 115
Target Start/End: Complemental strand, 28750299 - 28750271
Alignment:
Q  87 agttttgtttttagttcctacaaaataaa 115  Q
    |||||||||||||||||||||||||||||    
T  28750299 agttttgtttttagttcctacaaaataaa 28750271  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 115
Target Start/End: Complemental strand, 15890284 - 15890254
Alignment:
Q  85 aaagttttgtttttagttcctacaaaataaa 115  Q
    |||||||||||||||||||||||||||||||    
T  15890284 aaagttttgtttttagttcctacaaaataaa 15890254  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 115
Target Start/End: Complemental strand, 32723958 - 32723920
Alignment:
Q  77 aaatatataaagttttgtttttagttcctacaaaataaa 115  Q
    |||||| || |||||||||||||||||||||||||||||    
T  32723958 aaatatttacagttttgtttttagttcctacaaaataaa 32723920  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 115
Target Start/End: Original strand, 32974067 - 32974105
Alignment:
Q  77 aaatatataaagttttgtttttagttcctacaaaataaa 115  Q
    |||||| || |||||||||||||||||||||||||||||    
T  32974067 aaatatttatagttttgtttttagttcctacaaaataaa 32974105  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 115
Target Start/End: Complemental strand, 23678534 - 23678506
Alignment:
Q  87 agttttgtttttagttcctacaaaataaa 115  Q
    |||||||||||||||||||||||||||||    
T  23678534 agttttgtttttagttcctacaaaataaa 23678506  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 115
Target Start/End: Complemental strand, 45184257 - 45184229
Alignment:
Q  87 agttttgtttttagttcctacaaaataaa 115  Q
    |||||||||||||||||||||||||||||    
T  45184257 agttttgtttttagttcctacaaaataaa 45184229  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 115
Target Start/End: Original strand, 40081685 - 40081723
Alignment:
Q  77 aaatatataaagttttgtttttagttcctacaaaataaa 115  Q
    |||||| || |||||||||||||||||||||||||||||    
T  40081685 aaatatttacagttttgtttttagttcctacaaaataaa 40081723  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 115
Target Start/End: Original strand, 26626287 - 26626315
Alignment:
Q  87 agttttgtttttagttcctacaaaataaa 115  Q
    |||||||||||||||||||||||||||||    
T  26626287 agttttgtttttagttcctacaaaataaa 26626315  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 115
Target Start/End: Complemental strand, 18328102 - 18328064
Alignment:
Q  77 aaatatataaagttttgtttttagttcctacaaaataaa 115  Q
    |||||| || |||||||||||||||||||||||||||||    
T  18328102 aaatatttacagttttgtttttagttcctacaaaataaa 18328064  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 115
Target Start/End: Complemental strand, 25059568 - 25059540
Alignment:
Q  87 agttttgtttttagttcctacaaaataaa 115  Q
    |||||||||||||||||||||||||||||    
T  25059568 agttttgtttttagttcctacaaaataaa 25059540  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 115
Target Start/End: Original strand, 30579311 - 30579339
Alignment:
Q  87 agttttgtttttagttcctacaaaataaa 115  Q
    |||||||||||||||||||||||||||||    
T  30579311 agttttgtttttagttcctacaaaataaa 30579339  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 115
Target Start/End: Complemental strand, 46175859 - 46175821
Alignment:
Q  77 aaatatataaagttttgtttttagttcctacaaaataaa 115  Q
    |||||| || |||||||||||||||||||||||||||||    
T  46175859 aaatatttacagttttgtttttagttcctacaaaataaa 46175821  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 115
Target Start/End: Original strand, 9557599 - 9557627
Alignment:
Q  87 agttttgtttttagttcctacaaaataaa 115  Q
    |||||||||||||||||||||||||||||    
T  9557599 agttttgtttttagttcctacaaaataaa 9557627  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 115
Target Start/End: Complemental strand, 24681688 - 24681660
Alignment:
Q  87 agttttgtttttagttcctacaaaataaa 115  Q
    |||||||||||||||||||||||||||||    
T  24681688 agttttgtttttagttcctacaaaataaa 24681660  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 115
Target Start/End: Complemental strand, 5288412 - 5288374
Alignment:
Q  77 aaatatataaagttttgtttttagttcctacaaaataaa 115  Q
    |||||| || |||||||||||||||||||||||||||||    
T  5288412 aaatatttatagttttgtttttagttcctacaaaataaa 5288374  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 115
Target Start/End: Original strand, 11723424 - 11723452
Alignment:
Q  87 agttttgtttttagttcctacaaaataaa 115  Q
    |||||||||||||||||||||||||||||    
T  11723424 agttttgtttttagttcctacaaaataaa 11723452  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 115
Target Start/End: Complemental strand, 41974485 - 41974457
Alignment:
Q  87 agttttgtttttagttcctacaaaataaa 115  Q
    |||||||||||||||||||||||||||||    
T  41974485 agttttgtttttagttcctacaaaataaa 41974457  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 115
Target Start/End: Complemental strand, 4479400 - 4479347
Alignment:
Q  62 atttttcgtctctgcaaatatataaagttttgtttttagttcctacaaaataaa 115  Q
    |||||| ||||||| ||||||  | ||||||||||||||| |||||||||||||    
T  4479400 atttttagtctctgtaaatattcacagttttgtttttagtccctacaaaataaa 4479347  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 115
Target Start/End: Complemental strand, 2251572 - 2251544
Alignment:
Q  87 agttttgtttttagttcctacaaaataaa 115  Q
    |||||||||||||||||||||||||||||    
T  2251572 agttttgtttttagttcctacaaaataaa 2251544  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 44886669 - 44886733
Alignment:
Q  51 ggattaaatatatttttcgtctctgcaaatatataaagttttgtttttagttcctacaaaataaa 115  Q
    ||||||||||||||||| ||| ||  |||||| |||| |||| ||||||||||| | ||||||||    
T  44886669 ggattaaatatattttttgtccctttaaatatttaaaattttatttttagttccaataaaataaa 44886733  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 115
Target Start/End: Original strand, 7948989 - 7949017
Alignment:
Q  87 agttttgtttttagttcctacaaaataaa 115  Q
    |||||||||||||||||||||||||||||    
T  7948989 agttttgtttttagttcctacaaaataaa 7949017  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 115
Target Start/End: Original strand, 19089290 - 19089318
Alignment:
Q  87 agttttgtttttagttcctacaaaataaa 115  Q
    |||||||||||||||||||||||||||||    
T  19089290 agttttgtttttagttcctacaaaataaa 19089318  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 115
Target Start/End: Original strand, 21071485 - 21071513
Alignment:
Q  87 agttttgtttttagttcctacaaaataaa 115  Q
    |||||||||||||||||||||||||||||    
T  21071485 agttttgtttttagttcctacaaaataaa 21071513  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 115
Target Start/End: Complemental strand, 30187970 - 30187942
Alignment:
Q  87 agttttgtttttagttcctacaaaataaa 115  Q
    |||||||||||||||||||||||||||||    
T  30187970 agttttgtttttagttcctacaaaataaa 30187942  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 115
Target Start/End: Complemental strand, 39084662 - 39084634
Alignment:
Q  87 agttttgtttttagttcctacaaaataaa 115  Q
    |||||||||||||||||||||||||||||    
T  39084662 agttttgtttttagttcctacaaaataaa 39084634  T

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