View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_455 (Length: 225)
Name: NF8260A_low_455
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_455 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 54877608 - 54877391
Alignment:
| Q |
1 |
aatctctaacgaccgcctaagattgcgccacactttgcgggaaccgttagcgctctctacgtctatataaggatgattcaacg-caccctcaaggtacac |
99 |
Q |
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| T |
54877608 |
aatctctaacgaccttctaagattgcgccacactttgtgggaaccgttagcactctctacatctatataaggatgattcaacgacaccctcaaggtacac |
54877509 |
T |
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| Q |
100 |
ttctgcacataaccacaaatattgacttgagcgttggagtgttaatatgtctgcactcctccatcttgaagattcaaccttcgccacaccggagaaccat |
199 |
Q |
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| T |
54877508 |
ttctgcacataaccataaatactgacttgagcgttggagtgttaatatgtctgcactcctccaccttgaagattcaacctccgccacaccggagaaccat |
54877409 |
T |
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| Q |
200 |
gaacaaccgtttcatttc |
217 |
Q |
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||||||||||| |||||| |
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| T |
54877408 |
gaacaaccgttccatttc |
54877391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 18322975 - 18322943
Alignment:
| Q |
122 |
tgacttgagcgttggagtgttaatatgtctgca |
154 |
Q |
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||||||||||||||||||||||| ||||||||| |
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| T |
18322975 |
tgacttgagcgttggagtgttaacatgtctgca |
18322943 |
T |
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