View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8260A_low_462 (Length: 223)
Name: NF8260A_low_462
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_462 |
 | |
|
| [»] scaffold0271 (1 HSPs) |
| | |
|
| [»] scaffold0640 (1 HSPs) |
| | |
|
| [»] scaffold0648 (1 HSPs) |
| | |
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| [»] scaffold0274 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 24 - 192
Target Start/End: Complemental strand, 15536806 - 15536638
Alignment:
| Q |
24 |
aactcgatgcattaaaagtttgaagttgtgtttcaatcgggatttttccgttgaaattattgcaagataaattcaaataaccgaaaaagtttaagaaaga |
123 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||| | | |
|
|
| T |
15536806 |
aactcgatgcattaaaactttgaagttgtgttccaattgggatttttccattgaaattattgcaagataaattcaaataacccaaaaaggttaagacaaa |
15536707 |
T |
|
| Q |
124 |
catgatctgagaaatttcaccacaaaatttattattagagagatcaagagattccatgtttatcatgcc |
192 |
Q |
| |
|
|||| | |||| |||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
15536706 |
catgttttgaggaatttcaccataaaacttattattagagagatcgagagattccatgtttatcatgcc |
15536638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 26 - 199
Target Start/End: Original strand, 2709302 - 2709475
Alignment:
| Q |
26 |
ctcgatgcattaaaagtttgaagttgtgtttcaatcgggatttttccgttgaaattattgcaagataaattcaaataaccgaaaaagtttaagaaagaca |
125 |
Q |
| |
|
||||| ||||||||| | |||||||| || | || ||||||||||| || |||||||||||||||||||| ||| | ||| || ||| || || || |
|
|
| T |
2709302 |
ctcgaagcattaaaactctgaagttgagtccctattgggatttttccattaaaattattgcaagataaatttaaaacctctaaataggttatgatagcca |
2709401 |
T |
|
| Q |
126 |
tgatctgagaaatttcaccacaaaatttattattagagagatcaagagattccatgtttatcatgcctcgaatc |
199 |
Q |
| |
|
|| |||||| |||||||||| |||||||||| ||||||||||| ||||||||||||||| ||||| ||| |||| |
|
|
| T |
2709402 |
tgctctgaggaatttcaccaaaaaatttattgttagagagatcgagagattccatgtttttcatgtctccaatc |
2709475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 5e-52; HSPs: 28)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 24 - 199
Target Start/End: Complemental strand, 19425963 - 19425788
Alignment:
| Q |
24 |
aactcgatgcattaaaagtttgaagttgtgtttcaatcgggatttttccgttgaaattattgcaagataaattcaaataaccgaaaaagtttaagaaaga |
123 |
Q |
| |
|
||||||||||||||| |||||||||||||| || | |||||||||||||| |||||||||||||||||||||||| |||| |||||| |||||| ||| |
|
|
| T |
19425963 |
aactcgatgcattaattctttgaagttgtgttccagttgggatttttccgtttaaattattgcaagataaattcaaaaaacccaaaaaggttaagacaga |
19425864 |
T |
|
| Q |
124 |
catgatctgagaaatttcaccacaaaatttattattagagagatcaagagattccatgtttatcatgcctcgaatc |
199 |
Q |
| |
|
|||| |||||| ||||||||||||||| ||||||||||||||||| ||||||||||| ||| ||||||||| |||| |
|
|
| T |
19425863 |
catgctctgaggaatttcaccacaaaacttattattagagagatcgagagattccatatttttcatgcctccaatc |
19425788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 24 - 199
Target Start/End: Complemental strand, 19335285 - 19335110
Alignment:
| Q |
24 |
aactcgatgcattaaaagtttgaagttgtgtttcaatcgggatttttccgttgaaattattgcaagataaattcaaataaccgaaaaagtttaagaaaga |
123 |
Q |
| |
|
||||||||||||||||| |||||||||||||| || | ||||||||||| | ||| | ||| ||||||||||||||||||| |||||| |||||| ||| |
|
|
| T |
19335285 |
aactcgatgcattaaaactttgaagttgtgttccagttgggatttttccttcaaaactgttgtaagataaattcaaataacccaaaaaggttaagacaga |
19335186 |
T |
|
| Q |
124 |
catgatctgagaaatttcaccacaaaatttattattagagagatcaagagattccatgtttatcatgcctcgaatc |
199 |
Q |
| |
|
|||| || ||| |||||||||| |||| ||||||||||||||||| ||||||||||| ||||||||||||| |||| |
|
|
| T |
19335185 |
catgctccgaggaatttcaccataaaacttattattagagagatcgagagattccatatttatcatgcctccaatc |
19335110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 24 - 200
Target Start/End: Complemental strand, 19354988 - 19354812
Alignment:
| Q |
24 |
aactcgatgcattaaaagtttgaagttgtgtttcaatcgggatttttccgttgaaattattgcaagataaattcaaataaccgaaaaagtttaagaaaga |
123 |
Q |
| |
|
|||| |||||||||||| |||||||||| ||| | || ||||||||||||| ||||| ||| ||||||||||||||||||| |||||| |||||| ||| |
|
|
| T |
19354988 |
aacttgatgcattaaaactttgaagttgagttcctattgggatttttccgtcaaaattgttgtaagataaattcaaataacctaaaaaggttaagagaga |
19354889 |
T |
|
| Q |
124 |
catgatctgagaaatttcaccacaaaatttattattagagagatcaagagattccatgtttatcatgcctcgaatct |
200 |
Q |
| |
|
|||| |||||| ||| |||||| |||| |||||| ||||||| |||||||||||||| ||| ||||||||| ||||| |
|
|
| T |
19354888 |
catgctctgaggaatgtcaccataaaacttattactagagaggtcaagagattccatatttttcatgcctccaatct |
19354812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 24 - 194
Target Start/End: Complemental strand, 17943227 - 17943057
Alignment:
| Q |
24 |
aactcgatgcattaaaagtttgaagttgtgtttcaatcgggatttttccgttgaaattattgcaagataaattcaaataaccgaaaaagtttaagaaaga |
123 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| |||| ||||||||||| | ||||||||||||||||||||||| || ||||| ||||||| || |
|
|
| T |
17943227 |
aactcgatgcattaaaactttgaagttgagttccaattgggatttttccatcaaaattattgcaagataaattcaacacccccaaaaaatttaagagagc |
17943128 |
T |
|
| Q |
124 |
catgatctgagaaatttcaccacaaaatttattattagagagatcaagagattccatgtttatcatgcctc |
194 |
Q |
| |
|
|||| |||||| |||||||||| |||| ||||||||||||||||| ||||||||||| ||| ||||||||| |
|
|
| T |
17943127 |
catgctctgaggaatttcaccaaaaaacttattattagagagatctagagattccatatttgtcatgcctc |
17943057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 26 - 192
Target Start/End: Complemental strand, 16678481 - 16678315
Alignment:
| Q |
26 |
ctcgatgcattaaaagtttgaagttgtgtttcaatcgggatttttccgttgaaattattgcaagataaattcaaataaccgaaaaagtttaagaaagaca |
125 |
Q |
| |
|
||||||||||||||| |||||||||| ||| | |||||||||||||||| ||||| |||||||| |||||||||||||| ||||||||||||| |||| |
|
|
| T |
16678481 |
ctcgatgcattaaaactttgaagttgagttcctatcgggatttttccgtcaaaattgttgcaagacaaattcaaataacccaaaaagtttaagagagacg |
16678382 |
T |
|
| Q |
126 |
tgatctgagaaatttcaccacaaaatttattattagagagatcaagagattccatgtttatcatgcc |
192 |
Q |
| |
|
|||||| |||||||||| |||| ||||||||||||| || ||||||||||| ||| ||||||| |
|
|
| T |
16678381 |
cactctgaggaatttcaccagaaaacttattattagagaagtcgagagattccatatttttcatgcc |
16678315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 29 - 199
Target Start/End: Complemental strand, 18117236 - 18117066
Alignment:
| Q |
29 |
gatgcattaaaagtttgaagttgtgtttcaatcgggatttttccgttgaaattattgcaagataaattcaaataaccgaaaaagtttaagaaagacatga |
128 |
Q |
| |
|
|||||||||||| |||||||||| ||| | || ||||||||||||| ||||||||| | ||||||||||||||||| ||||| |||||| ||||||| |
|
|
| T |
18117236 |
gatgcattaaaactttgaagttgcgttgctattgggatttttccgtcaaaattattgtatgataaattcaaataacccaaaaaagttaagagagacatgc |
18117137 |
T |
|
| Q |
129 |
tctgagaaatttcaccacaaaatttattattagagagatcaagagattccatgtttatcatgcctcgaatc |
199 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| | ||| ||||||||||| ||| ||||||||| |||| |
|
|
| T |
18117136 |
tctgaggaatttcaccacaaagcttattattagaaaaatcgagagattccatatttttcatgcctccaatc |
18117066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 24 - 200
Target Start/End: Complemental strand, 18166429 - 18166253
Alignment:
| Q |
24 |
aactcgatgcattaaaagtttgaagttgtgtttcaatcgggatttttccgttgaaattattgcaagataaattcaaataaccgaaaaagtttaagaaaga |
123 |
Q |
| |
|
|||| |||||||||||| |||||||||| ||| | || |||||| |||||| || |||||| ||||||||||||||||||| |||||| |||||| ||| |
|
|
| T |
18166429 |
aacttgatgcattaaaactttgaagttgagttcctattgggattattccgtcaaagttattgtaagataaattcaaataacctaaaaaggttaagagaga |
18166330 |
T |
|
| Q |
124 |
catgatctgagaaatttcaccacaaaatttattattagagagatcaagagattccatgtttatcatgcctcgaatct |
200 |
Q |
| |
|
||| |||||| |||||||||| |||| |||||| ||||||| || ||||||||||| ||| ||||||||| ||||| |
|
|
| T |
18166329 |
gatgctctgaggaatttcaccataaaacttattactagagaggtcgagagattccatatttttcatgcctccaatct |
18166253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 23 - 199
Target Start/End: Original strand, 18872604 - 18872780
Alignment:
| Q |
23 |
caactcgatgcattaaaagtttgaagttgtgtttcaatcgggatttttccgttgaaattattgcaagataaattcaaataaccgaaaaagtttaagaaag |
122 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||| |||| || |||||||| | ||| | ||| ||||||||||||||||||| | ||||| ||| | || |
|
|
| T |
18872604 |
caactcgatgcattaaaactttgaagttgagttccaattggaatttttccttcaaaactgttgtaagataaattcaaataacccataaagtgtaacagag |
18872703 |
T |
|
| Q |
123 |
acatgatctgagaaatttcaccacaaaatttattattagagagatcaagagattccatgtttatcatgcctcgaatc |
199 |
Q |
| |
|
||||| |||||| ||||||||||||||| |||||| |||||||||| ||||||||||| || ||||||||| |||| |
|
|
| T |
18872704 |
acatgctctgaggaatttcaccacaaaacttattactagagagatcgagagattccatattgttcatgcctctaatc |
18872780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 24 - 199
Target Start/End: Complemental strand, 19394422 - 19394247
Alignment:
| Q |
24 |
aactcgatgcattaaaagtttgaagttgtgtttcaatcgggatttttccgttgaaattattgcaagataaattcaaataaccgaaaaagtttaagaaaga |
123 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| | || ||||||||||||| ||||| ||| |||||| |||||||||||| ||||||||||||| || |
|
|
| T |
19394422 |
aactcgatgcattaaaactttgaagttgagttcctattgggatttttccgtcaaaattgttgtaagatagattcaaataacccaaaaagtttaagagagc |
19394323 |
T |
|
| Q |
124 |
catgatctgagaaatttcaccacaaaatttattattagagagatcaagagattccatgtttatcatgcctcgaatc |
199 |
Q |
| |
|
|||| | |||| |||||||||| |||| |||||||| || ||||| |||||||||| ||| ||||||||| |||| |
|
|
| T |
19394322 |
catgctttgaggaatttcaccataaaacttattattggaaagatcgagagattccaaatttttcatgcctccaatc |
19394247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 29 - 199
Target Start/End: Complemental strand, 19462460 - 19462290
Alignment:
| Q |
29 |
gatgcattaaaagtttgaagttgtgtttcaatcgggatttttccgttgaaattattgcaagataaattcaaataaccgaaaaagtttaagaaagacatga |
128 |
Q |
| |
|
|||||||||||| |||||||||| ||| | || ||||||||||||| ||||||||| | ||||||||||||||||| ||||| |||||| ||||||| |
|
|
| T |
19462460 |
gatgcattaaaactttgaagttgcgttgctattgggatttttccgtcaaaattattgtatgataaattcaaataacccaaaaaagttaagagagacatgc |
19462361 |
T |
|
| Q |
129 |
tctgagaaatttcaccacaaaatttattattagagagatcaagagattccatgtttatcatgcctcgaatc |
199 |
Q |
| |
|
|| ||| |||||||||||||| ||||||||||| | ||| ||||||||||| ||| ||||||||| |||| |
|
|
| T |
19462360 |
tccgaggaatttcaccacaaagcttattattagaaaaatcgagagattccatatttttcatgcctccaatc |
19462290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 26 - 199
Target Start/End: Complemental strand, 18148101 - 18147928
Alignment:
| Q |
26 |
ctcgatgcattaaaagtttgaagttgtgtttcaatcgggatttttccgttgaaattattgcaagataaattcaaataaccgaaaaagtttaagaaagaca |
125 |
Q |
| |
|
||||||||||||||| |||||||||||||| | ||||||||| |||||| |||||||| | |||||||||||||||| |||||| |||||| ||||| |
|
|
| T |
18148101 |
ctcgatgcattaaaactttgaagttgtgttccgatcgggattcttccgtcaaaattattatatgataaattcaaataactcaaaaaggttaagagagaca |
18148002 |
T |
|
| Q |
126 |
tgatctgagaaatttcaccacaaaatttattattagagagatcaagagattccatgtttatcatgcctcgaatc |
199 |
Q |
| |
|
|| ||||| |||||||||| |||| || ||||||||||| || ||||||| ||| ||| ||||||||| |||| |
|
|
| T |
18148001 |
tgccctgaggaatttcaccaaaaaacttgttattagagaggtcgagagatttcatatttttcatgcctccaatc |
18147928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 200
Target Start/End: Complemental strand, 19352665 - 19352489
Alignment:
| Q |
24 |
aactcgatgcattaaaagtttgaagttgtgtttcaatcgggatttttccgttgaaattattgcaagataaattcaaataaccgaaaaagtttaagaaaga |
123 |
Q |
| |
|
|||| |||||||||||| |||||||||||||| || | ||||||||||| ||||||||||||||||||||||| ||| | |||||||||| | || |
|
|
| T |
19352665 |
aacttgatgcattaaaactttgaagttgtgttccagttgggatttttccattgaaattattgcaagataaatttaaaacctctaaaaagtttaggcgagc |
19352566 |
T |
|
| Q |
124 |
catgatctgagaaatttcaccacaaaatttattattagagagatcaagagattccatgtttatcatgcctcgaatct |
200 |
Q |
| |
|
|||| |||| | |||||||||| |||| ||||||||||||||||| |||||||||| ||| ||||||||| ||||| |
|
|
| T |
19352565 |
catggtctgcggaatttcaccaaaaaacttattattagagagatcgagagattccacatttttcatgcctccaatct |
19352489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 180
Target Start/End: Complemental strand, 19376895 - 19376739
Alignment:
| Q |
24 |
aactcgatgcattaaaagtttgaagttgtgtttcaatcgggatttttccgttgaaattattgcaagataaattcaaataaccgaaaaagtttaagaaaga |
123 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| | || || |||||||| | ||||| ||| |||||| |||||||||||| |||||| |||||| ||| |
|
|
| T |
19376895 |
aactcgatgcattaaaactttgaagttgagttcctattggaatttttccatcaaaattgttgtaagatagattcaaataacccaaaaaggttaagataga |
19376796 |
T |
|
| Q |
124 |
catgatctgagaaatttcaccacaaaatttattattagagagatcaagagattccat |
180 |
Q |
| |
|
|||| |||||| |||||||||| |||| |||||| ||||||| |||||||||||||| |
|
|
| T |
19376795 |
catggtctgaggaatttcaccataaaacttattactagagaggtcaagagattccat |
19376739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 24 - 199
Target Start/End: Complemental strand, 19382166 - 19381991
Alignment:
| Q |
24 |
aactcgatgcattaaaagtttgaagttgtgtttcaatcgggatttttccgttgaaattattgcaagataaattcaaataaccgaaaaagtttaagaaaga |
123 |
Q |
| |
|
|||| |||||||||||| |||||||||| ||| | | ||||||||||| | ||||||||||||||||||||||| | ||||||||||||| || |
|
|
| T |
19382166 |
aacttgatgcattaaaactttgaagttgagttcctgttgggatttttccatcaaaattattgcaagataaattcaacacctccaaaaagtttaagagagc |
19382067 |
T |
|
| Q |
124 |
catgatctgagaaatttcaccacaaaatttattattagagagatcaagagattccatgtttatcatgcctcgaatc |
199 |
Q |
| |
|
|||| | |||| |||||||||| |||| ||||||||||||||||| ||||||||||| ||||||||||||| |||| |
|
|
| T |
19382066 |
catgctttgaggaatttcaccaaaaaacttattattagagagatcgagagattccatatttatcatgcctccaatc |
19381991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 26 - 199
Target Start/End: Complemental strand, 19438229 - 19438056
Alignment:
| Q |
26 |
ctcgatgcattaaaagtttgaagttgtgtttcaatcgggatttttccgttgaaattattgcaagataaattcaaataaccgaaaaagtttaagaaagaca |
125 |
Q |
| |
|
||||||||||||||| |||||||||| ||| | ||||||||| |||||| |||||||| | ||||||||||||||| | |||||| |||||| ||||| |
|
|
| T |
19438229 |
ctcgatgcattaaaactttgaagttgcgttccgatcgggattcttccgtcaaaattattatatgataaattcaaataatccaaaaaggttaagagagaca |
19438130 |
T |
|
| Q |
126 |
tgatctgagaaatttcaccacaaaatttattattagagagatcaagagattccatgtttatcatgcctcgaatc |
199 |
Q |
| |
|
|| |||| |||||||||| |||| || |||||||| ||||| ||||||||||| ||| ||||||||| |||| |
|
|
| T |
19438129 |
tgccttgaggaatttcaccaaaaaacttgttattagatagatcgagagattccatatttttcatgcctctaatc |
19438056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 24 - 194
Target Start/End: Original strand, 17726264 - 17726434
Alignment:
| Q |
24 |
aactcgatgcattaaaagtttgaagttgtgtttcaatcgggatttttccgttgaaattattgcaagataaattcaaataaccgaaaaagtttaagaaaga |
123 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| | || ||||||||||| | || || ||| ||||||||||||||||||| ||||||| ||| |||| |
|
|
| T |
17726264 |
aactcgatgcattaaaactttgaagttgagttcctattgggatttttccatcaaacttgttgtaagataaattcaaataacccaaaaagtgtaacgaaga |
17726363 |
T |
|
| Q |
124 |
catgatctgagaaatttcaccacaaaatttattattagagagatcaagagattccatgtttatcatgcctc |
194 |
Q |
| |
|
|||| |||||| |||||||||| |||| ||||| || ||||| || |||||||||| ||| ||||||||| |
|
|
| T |
17726364 |
catgctctgaggaatttcaccagaaaaattattgttggagaggtcgagagattccaaatttttcatgcctc |
17726434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 24 - 194
Target Start/End: Original strand, 19027493 - 19027663
Alignment:
| Q |
24 |
aactcgatgcattaaaagtttgaagttgtgtttcaatcgggatttttccgttgaaattattgcaagataaattcaaataaccgaaaaagtttaagaaaga |
123 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| | || ||||||||||| | || || ||| ||||||||||||||||||| ||||||| ||| |||| |
|
|
| T |
19027493 |
aactcgatgcattaaaactttgaagttgagttcctattgggatttttccatcaaacttgttgtaagataaattcaaataacccaaaaagtgtaacgaaga |
19027592 |
T |
|
| Q |
124 |
catgatctgagaaatttcaccacaaaatttattattagagagatcaagagattccatgtttatcatgcctc |
194 |
Q |
| |
|
|||| |||||| |||||||||| |||| ||||| || ||||| || |||||||||| ||| ||||||||| |
|
|
| T |
19027593 |
catgctctgaggaatttcaccagaaaaattattgttggagaggtcgagagattccaaatttttcatgcctc |
19027663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 62 - 199
Target Start/End: Complemental strand, 18017257 - 18017120
Alignment:
| Q |
62 |
gggatttttccgttgaaattattgcaagataaattcaaataaccgaaaaagtttaagaaagacatgatctgagaaatttcaccacaaaatttattattag |
161 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||| || ||||||||||||| || |||| |||||| |||||||||| |||| |||||||||| |
|
|
| T |
18017257 |
gggatttttccatcaaaattattgcaagataaattcaacacccccaaaaagtttaagagagccatgctctgaggaatttcaccaaaaaacttattattag |
18017158 |
T |
|
| Q |
162 |
agagatcaagagattccatgtttatcatgcctcgaatc |
199 |
Q |
| |
|
||||||| ||||||||||| ||| ||||||||| |||| |
|
|
| T |
18017157 |
agagatcgagagattccatttttttcatgcctccaatc |
18017120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 194
Target Start/End: Complemental strand, 19456568 - 19456400
Alignment:
| Q |
26 |
ctcgatgcattaaaagtttgaagttgtgtttcaatcgggatttttccgttgaaattattgcaagataaattcaaataaccgaaaaagtttaagaaagaca |
125 |
Q |
| |
|
|||||||| |||||| |||||||||| ||| | ||||||||||||| || ||||||||| | ||||||||||||||||| |||||| |||||| ||||| |
|
|
| T |
19456568 |
ctcgatgcgttaaaactttgaagttgcgttgctatcgggatttttctgtcaaaattattgtatgataaattcaaataacccaaaaaggttaagagagaca |
19456469 |
T |
|
| Q |
126 |
tgatctgagaaatttcaccacaaaatttattattagagagatcaagagattccatgtttatcatgcctc |
194 |
Q |
| |
|
|| |||| | ||||||||||||||| ||||| || || | || ||||||||||| ||| |||| |||| |
|
|
| T |
19456468 |
tgctctgtggaatttcaccacaaaacttatttttggaaaattcgagagattccatatttttcatacctc |
19456400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 180
Target Start/End: Original strand, 14895119 - 14895273
Alignment:
| Q |
26 |
ctcgatgcattaaaagtttgaagttgtgtttcaatcgggatttttccgttgaaattattgcaagataaattcaaataaccgaaaaagtttaagaaagaca |
125 |
Q |
| |
|
|||||| |||||||| |||||||||| ||| | | || |||||||||| ||||| ||| ||||||||||||||||||| ||||| |||||| ||||| |
|
|
| T |
14895119 |
ctcgattcattaaaactttgaagttgagttcctgttggaatttttccgtcaaaattgttgtaagataaattcaaataacccaaaaatgttaagagagaca |
14895218 |
T |
|
| Q |
126 |
tgatctgagaaatttcaccacaaaatttattattagagagatcaagagattccat |
180 |
Q |
| |
|
|| |||| | |||||||||| |||| |||||| ||||||| |||||||||||||| |
|
|
| T |
14895219 |
tgctctgcggaatttcaccataaaacttattactagagaggtcaagagattccat |
14895273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 200
Target Start/End: Complemental strand, 25464321 - 25464147
Alignment:
| Q |
26 |
ctcgatgcattaaaagtttgaagttgtgtttcaatcgggatttttccgttgaaattattgcaagataaattcaaataaccgaaaaagtttaagaaagaca |
125 |
Q |
| |
|
||||||||||||||| |||||||||| ||| | || ||||||||||| | ||||| ||| |||||||||||||||||| ||||||||||||| | || |
|
|
| T |
25464321 |
ctcgatgcattaaaactttgaagttgagttcctattgggatttttccatcaaaattgttgtaagataaattcaaataactcaaaaagtttaagagaacca |
25464222 |
T |
|
| Q |
126 |
tgatctgagaaatttcaccacaaaatttattattagagagatcaagagattccatgtttatcatgcctcgaatct |
200 |
Q |
| |
|
| | |||| |||| ||||||||| || |||||||| ||||| ||||||||||| ||| ||||||||| ||||| |
|
|
| T |
25464221 |
ggctttgaggaattccaccacaaagcttgttattagaaagatcgagagattccatatttttcatgcctccaatct |
25464147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 37 - 180
Target Start/End: Complemental strand, 19400989 - 19400846
Alignment:
| Q |
37 |
aaaagtttgaagttgtgtttcaatcgggatttttccgttgaaattattgcaagataaattcaaataaccgaaaaagtttaagaaagacatgatctgagaa |
136 |
Q |
| |
|
||||||||||| ||| | | | || |||||| |||||| |||||||||||||||||||||||| | ||||||||||||| || |||| |||||| | |
|
|
| T |
19400989 |
aaaagtttgaatttgagatcctattgggattgttccgtcaaaattattgcaagataaattcaaaacctctaaaaagtttaagagagccatgctctgagga |
19400890 |
T |
|
| Q |
137 |
atttcaccacaaaatttattattagagagatcaagagattccat |
180 |
Q |
| |
|
||||||||| |||| ||||||||||||||||| ||||||||||| |
|
|
| T |
19400889 |
atttcaccaaaaaacttattattagagagatcgagagattccat |
19400846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 24 - 199
Target Start/End: Complemental strand, 19465625 - 19465451
Alignment:
| Q |
24 |
aactcgatgcattaaaagtttgaagttgtgtttcaatcgggatttttccgttgaaattattgcaagataaattcaaataaccgaaaaagtttaagaaaga |
123 |
Q |
| |
|
|||| ||| |||||||| |||||||||| ||| | || || |||||||| | ||||||||||||||||||||||| | |||||||||| || || |
|
|
| T |
19465625 |
aacttgatacattaaaactttgaagttgagttcctattggaatttttccatcaaaattattgcaagataaattcaacacctccaaaaagttta-gagagc |
19465527 |
T |
|
| Q |
124 |
catgatctgagaaatttcaccacaaaatttattattagagagatcaagagattccatgtttatcatgcctcgaatc |
199 |
Q |
| |
|
|||| |||||| |||||||||| |||| ||||||||||||||||| ||||||||||| || |||||||||| |||| |
|
|
| T |
19465526 |
catgctctgaggaatttcaccaaaaaacttattattagagagatcgagagattccatattaatcatgcctccaatc |
19465451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 190
Target Start/End: Complemental strand, 19415457 - 19415291
Alignment:
| Q |
24 |
aactcgatgcattaaaagtttgaagttgtgtttcaatcgggatttttccgttgaaattattgcaagataaattcaaataaccgaaaaagtttaagaaaga |
123 |
Q |
| |
|
|||| ||||| |||||| |||||||||| ||| | || ||||||||||||| ||| | ||| |||||||||| |||||| | |||||| |||||||||| |
|
|
| T |
19415457 |
aacttgatgcgttaaaactttgaagttgagttcctattgggatttttccgtcaaaactgttgtaagataaatttaaataatccaaaaaggttaagaaaga |
19415358 |
T |
|
| Q |
124 |
catgatctgagaaatttcaccacaaaatttattattagagagatcaagagattccatgtttatcatg |
190 |
Q |
| |
|
|||| |||||| ||||||||| | || |||||||| ||||| || ||||||||||| ||| ||||| |
|
|
| T |
19415357 |
catgctctgaggaatttcaccgtagaacttattatttgagaggtctagagattccatatttttcatg |
19415291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 26 - 199
Target Start/End: Complemental strand, 17951106 - 17950933
Alignment:
| Q |
26 |
ctcgatgcattaaaagtttgaagttgtgtttcaatcgggatttttccgttgaaattattgcaagataaattcaaataaccgaaaaagtttaagaaagaca |
125 |
Q |
| |
|
||||||||||||||| ||||||||||||| | | |||||||||||| | |||||||| | |||||||||||||||| |||||| | |||| ||||| |
|
|
| T |
17951106 |
ctcgatgcattaaaactttgaagttgtgtaccgaccgggatttttccatcaaaattattatatgataaattcaaataactcaaaaaggtcaagagagaca |
17951007 |
T |
|
| Q |
126 |
tgatctgagaaatttcaccacaaaatttattattagagagatcaagagattccatgtttatcatgcctcgaatc |
199 |
Q |
| |
|
| |||| |||||||||| |||| || ||||||||||| || ||||||||||| ||| ||||||||| |||| |
|
|
| T |
17951006 |
taccatgaggaatttcaccaaaaaacttgttattagagaggtcgagagattccatatttttcatgcctccaatc |
17950933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 26 - 199
Target Start/End: Complemental strand, 18109713 - 18109540
Alignment:
| Q |
26 |
ctcgatgcattaaaagtttgaagttgtgtttcaatcgggatttttccgttgaaattattgcaagataaattcaaataaccgaaaaagtttaagaaagaca |
125 |
Q |
| |
|
||||||||||||||| ||||||||||||| | | ||||||||||| | |||||||| | ||||||||||||||||| |||||| | |||| ||||| |
|
|
| T |
18109713 |
ctcgatgcattaaaactttgaagttgtgtaccgactgggatttttccatcaaaattattatatgataaattcaaataacccaaaaaggtcaagagagaca |
18109614 |
T |
|
| Q |
126 |
tgatctgagaaatttcaccacaaaatttattattagagagatcaagagattccatgtttatcatgcctcgaatc |
199 |
Q |
| |
|
| ||| | |||||||||| |||| || ||||||||||| || ||||||||||| ||| ||||||||| |||| |
|
|
| T |
18109613 |
taccctggggaatttcaccaaaaaacttgttattagagaggtcgagagattccatatttttcatgcctccaatc |
18109540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 18104776 - 18104693
Alignment:
| Q |
29 |
gatgcattaaaagtttgaagttgtgtttcaatcgggatttttccgttgaaattattgcaagataaattcaaataaccgaaaaag |
112 |
Q |
| |
|
|||||||||||| |||||||||||||| | |||||||| |||||| |||||||| | ||||||||||||||||| |||||| |
|
|
| T |
18104776 |
gatgcattaaaactttgaagttgtgttccggtcgggattcttccgtcaaaattattatatgataaattcaaataacccaaaaag |
18104693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 18104513 - 18104452
Alignment:
| Q |
130 |
ctgagaaatttcaccacaaaatttattattagagagatcaagagattccatgtttatcatgc |
191 |
Q |
| |
|
||||| |||||||||| |||| || ||||||||||| || ||||||||||| ||| |||||| |
|
|
| T |
18104513 |
ctgaggaatttcaccaaaaaacttgttattagagaggtcgagagattccatatttttcatgc |
18104452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 26 - 199
Target Start/End: Complemental strand, 8460837 - 8460664
Alignment:
| Q |
26 |
ctcgatgcattaaaagtttgaagttgtgtttcaatcgggatttttccgttgaaattattgcaagataaattcaaataaccgaaaaagtttaagaaagaca |
125 |
Q |
| |
|
||||||||||||||| |||||||||| ||| |||| ||||||||||||| |||||||||||||||||||||||| | ||||||||||||| || || |
|
|
| T |
8460837 |
ctcgatgcattaaaactttgaagttgagttccaattgggatttttccgtcaaaattattgcaagataaattcaaaacctctaaaaagtttaagagagcca |
8460738 |
T |
|
| Q |
126 |
tgatctgagaaatttcaccacaaaatttattattagagagatcaagagattccatgtttatcatgcctcgaatc |
199 |
Q |
| |
|
|| |||||| ||||||||||||||| |||||||||||||| || || |||||||| | | ||||||||| |||| |
|
|
| T |
8460737 |
tgctctgaggaatttcaccacaaaacttattattagagaggtcgagtgattccatatatttcatgcctccaatc |
8460664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 26 - 200
Target Start/End: Complemental strand, 11772 - 11598
Alignment:
| Q |
26 |
ctcgatgcattaaaagtttgaagttgtgtttcaatcgggatttttccgttgaaattattgcaagataaattcaaataaccgaaaaagtttaagaaagaca |
125 |
Q |
| |
|
||||||||||||||| |||||||||| || | || || || ||||||| ||||| ||||||||||| ||||||||||| || ||||||||| ||||| |
|
|
| T |
11772 |
ctcgatgcattaaaactttgaagttgagtccccattggtatagttccgttaaaattgttgcaagataagttcaaataacccaagaagtttaagtgagaca |
11673 |
T |
|
| Q |
126 |
tgatctgagaaatttcaccacaaaatttattattagagagatcaagagattccatgtttatcatgcctcgaatct |
200 |
Q |
| |
|
|| |||||| ||||||||||||||| ||||||||||||||||| ||||| ||||| ||| ||||||||| ||||| |
|
|
| T |
11672 |
tgctctgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatct |
11598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 26 - 199
Target Start/End: Complemental strand, 6677 - 6504
Alignment:
| Q |
26 |
ctcgatgcattaaaagtttgaagttgtgtttcaatcgggatttttccgttgaaattattgcaagataaattcaaataaccgaaaaagtttaagaaagaca |
125 |
Q |
| |
|
||||||||||||||| |||||||||| || | || || || ||||||| ||||| ||||||||||| ||||||||||| || ||||||||| ||||| |
|
|
| T |
6677 |
ctcgatgcattaaaactttgaagttgagtccccattggtatagttccgttaaaattgttgcaagataagttcaaataacccaagaagtttaagtgagaca |
6578 |
T |
|
| Q |
126 |
tgatctgagaaatttcaccacaaaatttattattagagagatcaagagattccatgtttatcatgcctcgaatc |
199 |
Q |
| |
|
|| |||||| ||||||||||||||| ||||||||||||||||| ||||| ||||| ||| ||||||||| |||| |
|
|
| T |
6577 |
tgctctgaggaatttcaccacaaaacttattattagagagatcgagagactccatatttttcatgcctccaatc |
6504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 69 - 199
Target Start/End: Original strand, 2873 - 3003
Alignment:
| Q |
69 |
ttccgttgaaattattgcaagataaattcaaataaccgaaaaagtttaagaaagacatgatctgagaaatttcaccacaaaatttattattagagagatc |
168 |
Q |
| |
|
||||||| ||||| ||||||||||| ||||||||||| |||||||||||| ||||||| || ||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
2873 |
ttccgttaaaattgttgcaagataagttcaaataacccaaaaagtttaagtgagacatgctccgaggaatttcaccacaaaacttattattagagagatc |
2972 |
T |
|
| Q |
169 |
aagagattccatgtttatcatgcctcgaatc |
199 |
Q |
| |
|
||||| ||||| ||| ||||||||| |||| |
|
|
| T |
2973 |
gagagactccatatttttcatgcctccaatc |
3003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 69 - 199
Target Start/End: Complemental strand, 21813 - 21683
Alignment:
| Q |
69 |
ttccgttgaaattattgcaagataaattcaaataaccgaaaaagtttaagaaagacatgatctgagaaatttcaccacaaaatttattattagagagatc |
168 |
Q |
| |
|
||||||| ||||| ||||||||||| ||||||||||| |||||||||||| ||||||| || ||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
21813 |
ttccgttaaaattgttgcaagataagttcaaataacccaaaaagtttaagtgagacatgctccgaggaatttcaccacaaaacttattattagagagatc |
21714 |
T |
|
| Q |
169 |
aagagattccatgtttatcatgcctcgaatc |
199 |
Q |
| |
|
||||| ||||| ||| ||||||||| |||| |
|
|
| T |
21713 |
gagagactccatatttttcatgcctccaatc |
21683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 69 - 199
Target Start/End: Original strand, 2341 - 2472
Alignment:
| Q |
69 |
ttccgttgaaattattgcaagataaattcaaataa-ccgaaaaagtttaagaaagacatgatctgagaaatttcaccacaaaatttattattagagagat |
167 |
Q |
| |
|
||||||| ||||| ||||||||||| ||||||||| || || ||||||||| ||||||| || ||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
2341 |
ttccgttaaaattgttgcaagataagttcaaataaacccaagaagtttaagtgagacatgctccgaggaatttcaccacaaaacttattattagagagat |
2440 |
T |
|
| Q |
168 |
caagagattccatgtttatcatgcctcgaatc |
199 |
Q |
| |
|
| ||||| ||||| ||| ||||||||| |||| |
|
|
| T |
2441 |
cgagagactccatatttttcatgcctccaatc |
2472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 164
Target Start/End: Original strand, 13665675 - 13665817
Alignment:
| Q |
24 |
aactcgatgcattaaaagtttgaagttgtgtttcaatcgggatttttccgttgaaattattgcaagataaattcaaataac--cgaaaaagtttaagaaa |
121 |
Q |
| |
|
|||| |||||||||||| |||||||||| ||| | || ||||||||||||| ||||| ||| ||||||||||||||| | |||||| |||||| | |
|
|
| T |
13665675 |
aacttgatgcattaaaactttgaagttgagttcctatagggatttttccgtcaaaattgttgtgagataaattcaaatatattccaaaaaggttaagata |
13665774 |
T |
|
| Q |
122 |
gacatgatctgagaaatttcaccacaaaatttattattagaga |
164 |
Q |
| |
|
|||||| || ||| |||||||||| |||| ||||||||||||| |
|
|
| T |
13665775 |
gacatgctccgaggaatttcaccaaaaaacttattattagaga |
13665817 |
T |
|
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