View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_465 (Length: 222)
Name: NF8260A_low_465
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_465 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 2906417 - 2906197
Alignment:
| Q |
2 |
cattagacctattaatgttcaatttgatgaacatcatacaaacaattatggtaatactggtgcaatttggacaccaaaatctccacaaacagctgctact |
101 |
Q |
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| T |
2906417 |
cattagacctattaatgttcaatttgatgaacatcatacaaacaattatggtaatactggtgcaatttggacaccaaaatctccacaaacagctgctact |
2906318 |
T |
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| Q |
102 |
gctgttagaagccctcgtggtacaaaatccccttctcattcccctattggtggtggcggtggagagcgtcgcgttcaattcggcacagttgtggaggggg |
201 |
Q |
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| T |
2906317 |
gctgttagaagccctcgtggtacaaaatccccttctcattcccctgttggtggcggcggtggagagcgtcgtgttcaattcggcacagttgtggaggtgg |
2906218 |
T |
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| Q |
202 |
gagatgacttttgtggcggca |
222 |
Q |
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| T |
2906217 |
gagatgaatttggtggcggca |
2906197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 2854389 - 2854169
Alignment:
| Q |
2 |
cattagacctattaatgttcaatttgatgaacatcatacaaacaattatggtaatactggtgcaatttggacaccaaaatctccacaaacagctgctact |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2854389 |
cattagacctattaatgttcaatttgatgaacatcatacaaacaattatggtaatactggtgcaatttggacaccaaaatctccacaaacagctgctact |
2854290 |
T |
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| Q |
102 |
gctgttagaagccctcgtggtacaaaatccccttctcattcccctattggtggtggcggtggagagcgtcgcgttcaattcggcacagttgtggaggggg |
201 |
Q |
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| T |
2854289 |
gctgttagaagccctcgtggtacaaaatccccttctcattcccctgttggtggtggcggtgaggagtgtcgggttcaatttggcacagttgtggagatgg |
2854190 |
T |
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| Q |
202 |
gagatgacttttgtggcggca |
222 |
Q |
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| T |
2854189 |
gagatgaatttggtggcggca |
2854169 |
T |
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