View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_477 (Length: 220)
Name: NF8260A_low_477
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_477 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 6307384 - 6307597
Alignment:
| Q |
1 |
ggaatcatttggtcggacataattggactctcatcaaaagcaaatagtgcctaaccttattgtgtgatcaggaaacaaccctacgatacatttatctttg |
100 |
Q |
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| T |
6307384 |
ggaatcatttggtcggacataattggactctcatcaaaagtaaatagtgcctaaccttattgtgtgatcaggaaacaaccctacgatacatttatctttg |
6307483 |
T |
|
| Q |
101 |
aatataattacctaccaattgttccagattaatattcatttctacaatgtcaattagatt-----catacctatcaggtattcaaaataaaaatttccat |
195 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6307484 |
aatataattacccaccaattgttccagattaatattcatttctacaatgtcaattagattcataccatacctatcaggtattcaaaataaaaatttccat |
6307583 |
T |
|
| Q |
196 |
cctcttatatgcat |
209 |
Q |
| |
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|||||||| ||||| |
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| T |
6307584 |
cctcttatttgcat |
6307597 |
T |
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