View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_48 (Length: 415)
Name: NF8260A_low_48
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 6956815 - 6956441
Alignment:
| Q |
1 |
tcaaactcggcaaagatgttgatgagaatctagttgactctacattgtataagaaaattataggctcactgagatacttaagcaatacaaacctaatttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6956815 |
tcaaactcggcaaagatgttgatgagaatctagttgactctacattgtataagaaaattataggctcactgagatacttaagcaatacaaacctaatttg |
6956716 |
T |
|
| Q |
101 |
acattccttgtgggataagtaagcaaattcatgaagaaaaaagtacatttgggtaattattcatgtttagtgaagcttcaatctcatagtgctcaaagaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
6956715 |
acattccttgtgggataagtaagcaaattcatgaagaaaaaagtacatttgggtaattattcacgtttagtgaagcttcaatctcatagtgctcaaagaa |
6956616 |
T |
|
| Q |
201 |
acaaggaatagttgcattatcctcgtg--------------tgtagcaacctcatttgcagcatgtcaaggacttaaattaaaatgttgcttgaagattt |
286 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6956615 |
acaaggaatagttgcattatcctcgtgtgttaagttgagtatgtagcaacctcatttgcagcatgtcaaggacttaaattaaaatgttgcttgaagattt |
6956516 |
T |
|
| Q |
287 |
gaagttaaatgaaactgaaagaatgagactattagtggataataagtcagctattgatttagcaaaacaccttgt |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6956515 |
gaagttaaatgaaactgaaagaatgagactattagtggataataagtcagctattgatttagcaaaacaccttgt |
6956441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 358 - 411
Target Start/End: Complemental strand, 19862473 - 19862420
Alignment:
| Q |
358 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacaggttc |
411 |
Q |
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| T |
19862473 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacgggttc |
19862420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 358 - 411
Target Start/End: Complemental strand, 19867042 - 19866989
Alignment:
| Q |
358 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacaggttc |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
19867042 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacgggttc |
19866989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 358 - 411
Target Start/End: Complemental strand, 19871943 - 19871890
Alignment:
| Q |
358 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacaggttc |
411 |
Q |
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| T |
19871943 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacgggttc |
19871890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 358 - 411
Target Start/End: Complemental strand, 19876844 - 19876791
Alignment:
| Q |
358 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacaggttc |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
19876844 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacgggttc |
19876791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 358 - 411
Target Start/End: Complemental strand, 36585725 - 36585672
Alignment:
| Q |
358 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacaggttc |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36585725 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacgggttc |
36585672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 361 - 411
Target Start/End: Original strand, 48580658 - 48580708
Alignment:
| Q |
361 |
tgtgtacagacccatttaagctagcttttcttcttcggtttgcacaggttc |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
48580658 |
tgtgtacagacccatttaagctagcttttcttcttcggtttgcacgggttc |
48580708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 358 - 411
Target Start/End: Original strand, 2064009 - 2064062
Alignment:
| Q |
358 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacaggttc |
411 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
2064009 |
ttgtgtgtacagacccatttaaactagcttttcttcttcggtttgcacgggttc |
2064062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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