View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8260A_low_480 (Length: 218)
Name: NF8260A_low_480
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_480 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 79 - 200
Target Start/End: Complemental strand, 9462349 - 9462211
Alignment:
| Q |
79 |
cttctgcatagttttctgcatcaggtgctacagttttaattaaatgaataaac-----------------aattgttcaagttcattagttgttgatcat |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||| ||||| |
|
|
| T |
9462349 |
cttctgcatagttttctgcatcaggtgctacagttttaattaaatgaataaacctgcaagcaacattaataattgttcaagttgattatttgttaatcat |
9462250 |
T |
|
| Q |
162 |
cttagtttgagatctcagaattattcactctactctctg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9462249 |
cttagtttgagatctcagaattattcactctactttctg |
9462211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 53
Target Start/End: Complemental strand, 9462391 - 9462363
Alignment:
| Q |
25 |
gtcataacagaaatgatcgcttagcgagc |
53 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
9462391 |
gtcataacagaaatgatcgcttagcgagc |
9462363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University