View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8260A_low_488 (Length: 214)

Name: NF8260A_low_488
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8260A_low_488
NF8260A_low_488
[»] scaffold0155 (1 HSPs)
scaffold0155 (1-197)||(36856-37052)
[»] chr6 (1 HSPs)
chr6 (1-177)||(2661720-2661900)
[»] chr5 (1 HSPs)
chr5 (1-186)||(22362349-22362534)
[»] chr8 (1 HSPs)
chr8 (123-197)||(22928130-22928203)
[»] scaffold0164 (1 HSPs)
scaffold0164 (100-186)||(34320-34405)
[»] chr2 (1 HSPs)
chr2 (94-164)||(24070620-24070690)
[»] chr4 (2 HSPs)
chr4 (137-197)||(31419336-31419395)
chr4 (5-49)||(31419486-31419530)


Alignment Details
Target: scaffold0155 (Bit Score: 114; Significance: 5e-58; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 37052 - 36856
Alignment:
Q  1 ggaaagaaaatagttggttttcattttatttgcatgatataaaactgtcnnnnnnnnnnnnccgctgccttttatattttattacaaaaa-cagtgcttt 99  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||            | ||||||||||||||||||||| ||||| | |||||||    
T  37052 ggaaagaaaatagttggttttcattttacttgcatgatataaaactgtcaaaaacaaaaaactgctgccttttatattttattaaaaaaaacggtgcttt 36953  T
Q  100 ggaatgctttgatgagtcatgcacggaagttacataatcttggaagttaaagggtaattttggaatggaaaaaaggcttacaccaaactcatattttg 197  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||| |||||    
T  36952 ggaatgctttgatgagtcatgcacgaaagttacataatcttggaagtcaaagggtaattttggaatggaaaaaaagc-tacaccaaactcatgttttg 36856  T

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Target: chr6 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 2661900 - 2661720
Alignment:
Q  1 ggaaagaaaatagttggttttcattttatttgcatgat---ataaaactgtcnnnnnnnnnnnnccgctgccttttatattttattacaaaaacag-tgc 96  Q
    |||||||||||||||||||| ||||||| |||||||||   |||||||||||            | ||||||||||||||||||||| |||||  | |||    
T  2661900 ggaaagaaaatagttggtttacattttacttgcatgatgatataaaactgtcaaaaacaaaaaactgctgccttttatattttattaaaaaaaatggtgc 2661801  T
Q  97 tttggaatgctttgatgagtcatgcacggaagttacataatcttggaagttaaagggtaattttggaatggaaaaaaggct 177  Q
    |||||||||||||||||||||||| |||||||||||||||   | ||||||| ||||||||||||||||| ||||||||||    
T  2661800 tttggaatgctttgatgagtcatgtacggaagttacataaagctagaagttagagggtaattttggaatgaaaaaaaggct 2661720  T

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Target: chr5 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 22362349 - 22362534
Alignment:
Q  1 ggaaagaaaatagttggttttcattttatttgcatgatataaaactgtcnnnnnnnnnnnnccgctgccttttatattttattacaaaaacagt-gcttt 99  Q
    |||||||||||| ||||||| ||||||| ||||||||||||||||||||            | ||||||||||||||||  ||| || ||  || |||||    
T  22362349 ggaaagaaaatatttggtttacattttacttgcatgatataaaactgtcaaaaacaaaaaactgctgccttttatatttatttaaaataaatgttgcttt 22362448  T
Q  100 ggaatgctttgatgagtcatgcacggaagttacataatcttggaagttaaagggtaattttggaatggaaaaaaggcttacaccaaa 186  Q
    ||||||||||  |||||||| |||||||||||||||||  | ||||||| |||||||||||| |||||||||||||| |||||||||    
T  22362449 ggaatgcttttttgagtcatacacggaagttacataatggtagaagttagagggtaattttgaaatggaaaaaaggc-tacaccaaa 22362534  T

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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 123 - 197
Target Start/End: Complemental strand, 22928203 - 22928130
Alignment:
Q  123 cggaagttacataatcttggaagttaaagggtaattttggaatggaaaaaaggcttacaccaaactcatattttg 197  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||| ||| |||||    
T  22928203 cggaagttacataatcctggaatttaaagggtaattttggaatggaaaaaaggc-tacaccaaacacatgttttg 22928130  T

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Target: scaffold0164 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 186
Target Start/End: Complemental strand, 34405 - 34320
Alignment:
Q  100 ggaatgctttgatgagtcatgcacggaagttacataatcttggaagttaaagggtaattttggaatggaaaaaaggcttacaccaaa 186  Q
    ||||||||||  | ||||||||||||||||||||||||    ||||||| ||||||||||||||||  ||||||||| |||||||||    
T  34405 ggaatgctttttttagtcatgcacggaagttacataatgcaagaagttagagggtaattttggaattaaaaaaaggc-tacaccaaa 34320  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 164
Target Start/End: Complemental strand, 24070690 - 24070620
Alignment:
Q  94 tgctttggaatgctttgatgagtcatgcacggaagttacataatcttggaagttaaagggtaattttggaa 164  Q
    ||||||||||||||||  |||||||| ||| |||||||||||||  | ||||||| |||||||||||||||    
T  24070690 tgctttggaatgcttttttgagtcatacacagaagttacataatggtagaagttagagggtaattttggaa 24070620  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 31419395 - 31419336
Alignment:
Q  137 tcttggaagttaaagggtaattttggaatggaaaaaaggcttacaccaaactcatattttg 197  Q
    |||||||||||||||| |||||| |||||||||||||||| |||| ||||||||| |||||    
T  31419395 tcttggaagttaaaggataatttgggaatggaaaaaaggc-tacatcaaactcatgttttg 31419336  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 31419530 - 31419486
Alignment:
Q  5 agaaaatagttggttttcattttatttgcatgatataaaactgtc 49  Q
    |||||||||||||||| || |||| ||||||||||||||||||||    
T  31419530 agaaaatagttggtttacaatttacttgcatgatataaaactgtc 31419486  T

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