View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_492 (Length: 213)
Name: NF8260A_low_492
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_492 |
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Alignment Details
Target: chr7 (Bit Score: 134; Significance: 6e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 12 - 193
Target Start/End: Original strand, 8284677 - 8284858
Alignment:
| Q |
12 |
tcgaacaatattggatactctaatgctaatgatgggatggcggtgttttctaattcacccgcggtgtccgtgaaccaaaaccaagttgatgcttattttc |
111 |
Q |
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| T |
8284677 |
tcgaacaatatcggattctccaatgctaatgatgggatggtggtgttttctaattcacccgcagtctcggtgaaccaaaaccaagttgatgcttattttc |
8284776 |
T |
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| Q |
112 |
gcatccctactgaaaccgatttacaactacctacacccccatttttctctttccctgtggagaatcatattaatgaagtagt |
193 |
Q |
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| T |
8284777 |
aaacccctactggaaccgatttacaactacctacacccccatttttctctttccctgtgcagaatcatattaatgaagtagt |
8284858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 38 - 185
Target Start/End: Original strand, 34694753 - 34694900
Alignment:
| Q |
38 |
taatgatgggatggcggtgttttctaattcacccgcggtgtccgtgaaccaaaaccaagttgatgcttattttcgcatccctactgaaaccgatttacaa |
137 |
Q |
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| T |
34694753 |
taatgatgggatggtgatggtgcctaattcacccgcaatatctctgaaccaaaatcaagatgatacttatcctcacaccctcactggaaccggtctacaa |
34694852 |
T |
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| Q |
138 |
ctacctacacccccatttttctctttccctgtggagaatcatattaat |
185 |
Q |
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| T |
34694853 |
ctacctacacccccattttcctctttcccggttgagaatcatattaat |
34694900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 121 - 188
Target Start/End: Original strand, 34686910 - 34686977
Alignment:
| Q |
121 |
ctgaaaccgatttacaactacctacacccccatttttctctttccctgtggagaatcatattaatgaa |
188 |
Q |
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| T |
34686910 |
ctgaaaccggtctacaactacctacacccccatttccctctttcccggttgagaatcatattaatgaa |
34686977 |
T |
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