View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_498 (Length: 210)
Name: NF8260A_low_498
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_498 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 54 - 191
Target Start/End: Complemental strand, 238347 - 238210
Alignment:
| Q |
54 |
ttaattccacttaaaaagaggtcatatctcagcaaatatagcattactagaattgatattgctttagaagccgttgatgaagcggccattgtgatttctc |
153 |
Q |
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| T |
238347 |
ttaattccacttaaaaagaggtcatatctcagcaaatatagcattactagaattgatattgctttagaagccgttgatgaagcggccattgtgatttctc |
238248 |
T |
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| Q |
154 |
aaaattcctccacaagaggaagtgtcgctcctagtaga |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
238247 |
aaaattcctccacaagaggaagtgtcgctcctagtaga |
238210 |
T |
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