View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_499 (Length: 210)
Name: NF8260A_low_499
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_499 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 20217512 - 20217685
Alignment:
| Q |
18 |
aaaatagattgttagtatatagacatgtaatttgaattgagacaaaaatgaaaaataa-tggagtaatacatctgtacaaactgcaacgaaaaaaggtct |
116 |
Q |
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| T |
20217512 |
aaaatagattgttagtatatagacaggtaatttgaattcagataaaaatgaaaaaaaaatggagtaatacatctgtacaaactgcaacgaaaaaaggtct |
20217611 |
T |
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| Q |
117 |
attagattcaagtgtcatgtttggagtgacgctgcaattgactgatatttgatctggttgtattatagttatag |
190 |
Q |
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||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
20217612 |
attagattcaagtgtcatgattggagtcacgctgcaattgactgatgtttgatctggttgtattatagttatag |
20217685 |
T |
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