View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_500 (Length: 210)
Name: NF8260A_low_500
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_500 |
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| [»] scaffold0602 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 117; Significance: 9e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 31 - 190
Target Start/End: Complemental strand, 8615822 - 8615666
Alignment:
| Q |
31 |
gaaacaagtttaaatgaatttctgaaatctaacaacaagttaacaatatgacttttcagaaaagtcaaagttggtaaattttcataaaagttactaaaga |
130 |
Q |
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| T |
8615822 |
gaaacaagtttaaatgaatttctgaaatctaacaa---gttaacaatatgacttttcagaaaaatcaaagttggtaaattttcataaaagttactaaaga |
8615726 |
T |
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| Q |
131 |
caagtatgaatgaatttctgaaatctgacaacaacnnnnnnnggaacacaagttataggt |
190 |
Q |
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| T |
8615725 |
caagtatgaatgaatttctgaaatctgacaataacaaaaaaaggaacacaagttataggt |
8615666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 31 - 190
Target Start/End: Original strand, 8643200 - 8643356
Alignment:
| Q |
31 |
gaaacaagtttaaatgaatttctgaaatctaacaacaagttaacaatatgacttttcagaaaagtcaaagttggtaaattttcataaaagttactaaaga |
130 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8643200 |
gaaacaagtttaaatgaatttctgaaatctaaca---agttaacaatatgacttttcagaaaaatcaaagttggtaaattttcataaaagttactaaaga |
8643296 |
T |
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| Q |
131 |
caagtatgaatgaatttctgaaatctgacaacaacnnnnnnnggaacacaagttataggt |
190 |
Q |
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| T |
8643297 |
caagtatgaatgaatttctgaaatctgacaataacaaaaaaaggaacacaagttataggt |
8643356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0602 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0602
Description:
Target: scaffold0602; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 31 - 190
Target Start/End: Complemental strand, 6276 - 6119
Alignment:
| Q |
31 |
gaaacaagtttaaatgaatttctgaaatctaacaacaagttaacaatatgacttttcagaaaagtcaaagttggtaaattttcataaaagttactaaaga |
130 |
Q |
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|||||||||| ||||||||||||||||||||||||||| || | |||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
6276 |
gaaacaagttagaatgaatttctgaaatctaacaacaagatagc--tatgacttttcataaaaatcaaagttggtaaattttcataaaagttactaaaga |
6179 |
T |
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| Q |
131 |
caagtatgaatgaatttctgaaatctgacaacaacnnnnnnnggaacacaagttataggt |
190 |
Q |
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||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
6178 |
caagtatgaatgaatttctgaaatctgacaataacaaaaaaaggaacacaagttataggt |
6119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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