View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8260A_low_51 (Length: 410)

Name: NF8260A_low_51
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8260A_low_51
NF8260A_low_51
[»] chr3 (22 HSPs)
chr3 (18-372)||(47889567-47889913)
chr3 (102-157)||(3178754-3178809)
chr3 (102-156)||(8950526-8950580)
chr3 (102-156)||(13856151-13856205)
chr3 (101-203)||(20382524-20382626)
chr3 (102-156)||(21853249-21853303)
chr3 (102-156)||(23467516-23467570)
chr3 (102-156)||(40845939-40845993)
chr3 (101-202)||(43347357-43347457)
chr3 (102-156)||(5391509-5391563)
chr3 (101-158)||(1781812-1781869)
chr3 (104-156)||(32352899-32352951)
chr3 (101-156)||(36539684-36539739)
chr3 (102-156)||(44994990-44995045)
chr3 (101-158)||(19649393-19649450)
chr3 (103-158)||(54546954-54547009)
chr3 (101-158)||(10839401-10839458)
chr3 (101-158)||(8926816-8926873)
chr3 (101-145)||(27642723-27642767)
chr3 (116-158)||(22845398-22845440)
chr3 (101-195)||(48206868-48206960)
chr3 (116-156)||(791866-791906)
[»] chr5 (20 HSPs)
chr5 (101-256)||(10081096-10081252)
chr5 (101-197)||(8456984-8457079)
chr5 (101-203)||(11856300-11856402)
chr5 (102-156)||(23218537-23218591)
chr5 (102-156)||(37169055-37169109)
chr5 (102-156)||(38397650-38397704)
chr5 (105-158)||(9738008-9738061)
chr5 (102-158)||(39862509-39862565)
chr5 (102-156)||(6257432-6257486)
chr5 (101-203)||(614413-614515)
chr5 (102-156)||(16618592-16618646)
chr5 (104-156)||(15631665-15631718)
chr5 (101-158)||(42119672-42119729)
chr5 (101-157)||(29790240-29790296)
chr5 (101-197)||(25560348-25560443)
chr5 (101-158)||(27916190-27916247)
chr5 (101-158)||(36769095-36769152)
chr5 (101-156)||(33271291-33271346)
chr5 (116-158)||(19322058-19322100)
chr5 (101-158)||(10115210-10115267)
[»] chr2 (15 HSPs)
chr2 (101-158)||(6318479-6318536)
chr2 (101-156)||(40277309-40277364)
chr2 (102-156)||(14186460-14186514)
chr2 (102-156)||(14942066-14942120)
chr2 (102-156)||(42769780-42769834)
chr2 (102-156)||(19181600-19181654)
chr2 (102-156)||(29846494-29846548)
chr2 (104-158)||(1387312-1387366)
chr2 (101-257)||(3956522-3956679)
chr2 (104-158)||(33009723-33009777)
chr2 (101-158)||(14539725-14539782)
chr2 (116-158)||(43139797-43139839)
chr2 (101-158)||(41674727-41674784)
chr2 (101-158)||(2888091-2888148)
chr2 (116-156)||(3597903-3597943)
[»] chr6 (12 HSPs)
chr6 (102-156)||(14309820-14309874)
chr6 (102-156)||(1727955-1728009)
chr6 (102-156)||(9231876-9231930)
chr6 (102-156)||(13627592-13627646)
chr6 (102-156)||(24694673-24694727)
chr6 (101-203)||(13103139-13103241)
chr6 (101-156)||(28750671-28750726)
chr6 (102-152)||(24497596-24497646)
chr6 (101-158)||(34103735-34103792)
chr6 (114-158)||(11212721-11212765)
chr6 (116-157)||(8412717-8412758)
chr6 (101-158)||(27863749-27863806)
[»] chr4 (25 HSPs)
chr4 (102-156)||(52632570-52632624)
chr4 (102-156)||(1535823-1535877)
chr4 (102-156)||(36012207-36012261)
chr4 (102-156)||(49284409-49284463)
chr4 (101-197)||(17888571-17888666)
chr4 (102-156)||(34241045-34241099)
chr4 (102-156)||(46583563-46583617)
chr4 (101-158)||(31377440-31377497)
chr4 (101-157)||(11054507-11054563)
chr4 (102-156)||(16338235-16338289)
chr4 (102-156)||(25954802-25954856)
chr4 (101-158)||(9742554-9742611)
chr4 (102-158)||(20818617-20818673)
chr4 (102-156)||(37801286-37801340)
chr4 (101-158)||(12792252-12792309)
chr4 (101-158)||(47084062-47084119)
chr4 (116-156)||(5780790-5780830)
chr4 (115-156)||(322584-322625)
chr4 (101-158)||(10094414-10094471)
chr4 (102-158)||(54090230-54090286)
chr4 (110-156)||(35018988-35019034)
chr4 (102-156)||(50328848-50328902)
chr4 (102-139)||(36851409-36851446)
chr4 (101-158)||(46474044-46474101)
chr4 (229-257)||(17888700-17888728)
[»] chr8 (14 HSPs)
chr8 (101-158)||(16523156-16523213)
chr8 (102-156)||(22324648-22324702)
chr8 (102-156)||(21525410-21525464)
chr8 (102-156)||(26021448-26021502)
chr8 (102-156)||(35806846-35806900)
chr8 (102-156)||(42013924-42013978)
chr8 (102-156)||(42072480-42072534)
chr8 (102-156)||(33934391-33934445)
chr8 (104-157)||(24065324-24065377)
chr8 (101-154)||(16591396-16591449)
chr8 (101-158)||(43282872-43282929)
chr8 (102-158)||(21488116-21488172)
chr8 (114-153)||(16819007-16819046)
chr8 (114-158)||(2271245-2271289)
[»] chr7 (15 HSPs)
chr7 (102-156)||(10576725-10576779)
chr7 (102-156)||(34259570-34259624)
chr7 (102-156)||(34707168-34707222)
chr7 (101-158)||(19334581-19334638)
chr7 (101-203)||(33057678-33057779)
chr7 (102-156)||(24320461-24320515)
chr7 (102-156)||(29555961-29556015)
chr7 (102-156)||(32876552-32876606)
chr7 (102-156)||(44164765-44164819)
chr7 (101-158)||(17303135-17303192)
chr7 (102-156)||(29238165-29238219)
chr7 (102-156)||(29981135-29981189)
chr7 (101-158)||(10334228-10334285)
chr7 (101-158)||(15017823-15017880)
chr7 (114-158)||(9770709-9770753)
[»] chr1 (19 HSPs)
chr1 (102-156)||(29149570-29149624)
chr1 (102-152)||(48392428-48392478)
chr1 (101-197)||(38859863-38859958)
chr1 (101-156)||(42456624-42456679)
chr1 (102-156)||(3346838-3346892)
chr1 (102-156)||(7742801-7742855)
chr1 (102-156)||(23908337-23908391)
chr1 (102-156)||(49902520-49902574)
chr1 (102-156)||(5975040-5975094)
chr1 (101-196)||(30745357-30745451)
chr1 (101-196)||(30766808-30766902)
chr1 (101-151)||(37189697-37189747)
chr1 (102-156)||(47022754-47022808)
chr1 (102-156)||(42517316-42517374)
chr1 (115-158)||(5558359-5558402)
chr1 (102-156)||(10156038-10156092)
chr1 (101-158)||(10907669-10907726)
chr1 (101-157)||(13131947-13132003)
chr1 (101-197)||(26835350-26835445)
[»] scaffold0079 (1 HSPs)
scaffold0079 (102-156)||(54571-54625)
[»] scaffold0045 (1 HSPs)
scaffold0045 (101-206)||(34473-34578)
[»] scaffold0086 (1 HSPs)
scaffold0086 (101-158)||(20852-20909)
[»] scaffold0016 (1 HSPs)
scaffold0016 (116-156)||(85552-85592)


Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 372
Target Start/End: Complemental strand, 47889913 - 47889567
Alignment:
Q  18 gaagaaattagaataaagagtaatgtgagcatggacggttctatggcctggcgacctcgggtactcacccaannnnnnnnnnnatgtaaatccctatgaa 117  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||| |||||  ||||            | |   | ||||||||    
T  47889913 gaagaaattagaataaagagcaatgtgagcatggacggttctatggcctggtgaccccggatactcgtccaatttttttattttttt---ttcctatgaa 47889817  T
Q  118 tttcttatataaatccctataaattgggcaatttctttagannnnnnnattatttacttgacaatttctaatgtaaaccctataaacgttcgcaannnnn 217  Q
    |||||||||||||| |||||||||||||||||||||||| |       |||||||||||||||||||||||||||||||||||||||||| ||||         
T  47889816 tttcttatataaattcctataaattgggcaatttctttaaatttttttattatttacttgacaatttctaatgtaaaccctataaacgtttgcaatattt 47889717  T
Q  218 nnnngcccgtactttacaataatcctggctccgccactgaatgtgagcgtacaagaaaatttaatacacaaaaacgtttcggtttcttccctcttaacca 317  Q
        ||||||||||||||||||| ||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47889716 ttttgcccgtactttacaataattctggctccgccactgaat-----cgtacaagaaaatttaatacacaaaaacgtttcggtttcttccctcttaacca 47889622  T
Q  318 caatccgttgaaaaccatggaaccccatattctttgttctccctattttgatgtc 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47889621 caatccgttgaaaaccatggaaccccatattctttgttctccctattttgatgtc 47889567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 3178809 - 3178754
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttag 157  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3178809 tgtaaatccctatgaatttcttatataaatctctataaattgggcaatttctttag 3178754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 8950526 - 8950580
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8950526 tgtaaattcctatgaatttcttatataaatccctataaattgggcaatttcttta 8950580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 13856205 - 13856151
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13856205 tgtaaatccctatgaatttcttatataaatccctataaattggacaatttcttta 13856151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 101 - 203
Target Start/End: Complemental strand, 20382626 - 20382524
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagannnnnnnattatttacttgacaatttctaatgtaaac-ccta 199  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||       ||||||| |||| |||||||| |||||||| ||||    
T  20382626 atgtaaatccctatgaatttcttatataaacccctataaattgggaaatttctttagatttttttattatttgcttg-caatttcttatgtaaactccta 20382528  T
Q  200 taaa 203  Q
    ||||    
T  20382527 taaa 20382524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 21853303 - 21853249
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21853303 tgtaaatccctatgaatttcttatataaaaccctataaattgggcaatttcttta 21853249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 23467516 - 23467570
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23467516 tgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttta 23467570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 40845939 - 40845993
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  40845939 tgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttta 40845993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 101 - 202
Target Start/End: Original strand, 43347357 - 43347457
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagannnnnnnattatttacttgacaatttctaatgtaaaccctat 200  Q
    |||||||| ||| ||||||||||||||||| ||||| |||||||||||||||||||||       ||||||| |||| |||||||| |||||||||||||    
T  43347357 atgtaaattcctctgaatttcttatataaacccctacaaattgggcaatttctttagattttttgattatttgcttg-caatttcttatgtaaaccctat 43347455  T
Q  201 aa 202  Q
    ||    
T  43347456 aa 43347457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 5391563 - 5391509
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  5391563 tgtaaatccctatgaatttcttatataaacccctataaattggacaatttcttta 5391509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 1781869 - 1781812
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    |||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||    
T  1781869 atgtaaatccctctgaatttcttatataaaccccaataaattgggcaatttctttaga 1781812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 32352951 - 32352899
Alignment:
Q  104 taaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  32352951 taaatccctatgaatttcttatataaacccctataaattaggcaatttcttta 32352899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 101 - 156
Target Start/End: Complemental strand, 36539739 - 36539684
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    |||||||||||||| ||||||||||||||  |||||||||||||||||||||||||    
T  36539739 atgtaaatccctataaatttcttatataatcccctataaattgggcaatttcttta 36539684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 44994990 - 44995045
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccc-tataaattgggcaatttcttta 156  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  44994990 tgtaaatccctatgaatttcttatataaaccccttataaattgggcaatttcttta 44995045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 19649393 - 19649450
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    ||||||||| |||||||||||||||||||| || |||||||||| |||||||||||||    
T  19649393 atgtaaatcgctatgaatttcttatataaacccttataaattggacaatttctttaga 19649450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 158
Target Start/End: Complemental strand, 54547009 - 54546954
Alignment:
Q  103 gtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    |||||| ||| ||||||||||||||||| ||||||||||||| |||||||||||||    
T  54547009 gtaaattcctttgaatttcttatataaacccctataaattggacaatttctttaga 54546954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 10839401 - 10839458
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    ||||||||  || ||||||||||||||||| | |||||||||||||||||||||||||    
T  10839401 atgtaaatttctctgaatttcttatataaacctctataaattgggcaatttctttaga 10839458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 8926873 - 8926816
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    |||||||| ||| ||||||||| ||||||| ||||||||||| |||||||||| ||||    
T  8926873 atgtaaattcctctgaatttctgatataaacccctataaatttggcaatttctgtaga 8926816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 27642767 - 27642723
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattggg 145  Q
    |||||||||| | |||||||||||||||||||| |||||||||||    
T  27642767 atgtaaatccttttgaatttcttatataaatccttataaattggg 27642723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 22845398 - 22845440
Alignment:
Q  116 aatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    ||||||||||||||| ||||||||||| | |||||||||||||    
T  22845398 aatttcttatataaacccctataaatttgacaatttctttaga 22845440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 195
Target Start/End: Complemental strand, 48206960 - 48206868
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagannnnnnnattatttacttgacaatttctaatgtaaac 195  Q
    |||||||| ||| |||||| |||||||||| ||||||||||| | |||||| ||||||       |||||||||||| |||||||| ||||||||    
T  48206960 atgtaaattcctctgaatt-cttatataaacccctataaatttgacaatttttttagattttttgattatttacttg-caatttcttatgtaaac 48206868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 791906 - 791866
Alignment:
Q  116 aatttcttatataaatccctataaattgggcaatttcttta 156  Q
    |||||||||||||||| ||||||||||| | ||||||||||    
T  791906 aatttcttatataaattcctataaattgcgtaatttcttta 791866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 101 - 256
Target Start/End: Complemental strand, 10081252 - 10081096
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagannnnnnnattatttacttgacaatttctaatgtaaac-ccta 199  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||       ||||||| ||| ||||||||| |||||||| ||||    
T  10081252 atgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttagatttttttattatttgctt-acaatttcttatgtaaactccta 10081154  T
Q  200 taaacgt-tcgcaannnnnnnnngcccgtactttacaataatcctggctccgccactg 256  Q
    |||| || | ||||         |||||  ||||||||||||||||||||||||||||    
T  10081153 taaatgtgttgcaatttttttttgcccgggctttacaataatcctggctccgccactg 10081096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 101 - 197
Target Start/End: Original strand, 8456984 - 8457079
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagannnnnnnattatttacttgacaatttctaatgtaaaccc 197  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||       ||||||| |||| |||||||| ||||||||||    
T  8456984 atgtaaatccctatgaatttcttatataaccccctataaattgggcaatttctttagatttttttattatttgcttg-caatttcttatgtaaaccc 8457079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 101 - 203
Target Start/End: Complemental strand, 11856402 - 11856300
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagannnnnnnattatttacttgacaatttctaatgtaaac-ccta 199  Q
    ||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||       |||||||||||| |||||||| |||||||| ||||    
T  11856402 atgtaaatcgctctgaatttcttatataaatcactataaattgggcaatttctttagattttttgattatttacttg-caatttcttatgtaaactccta 11856304  T
Q  200 taaa 203  Q
    ||||    
T  11856303 taaa 11856300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 23218591 - 23218537
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23218591 tgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttta 23218537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 37169055 - 37169109
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37169055 tgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttta 37169109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 38397704 - 38397650
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38397704 tgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttta 38397650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 9738008 - 9738061
Alignment:
Q  105 aaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9738008 aaatccctatgaatttcttatataaatccctataaattggacaatttctttaga 9738061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 102 - 158
Target Start/End: Original strand, 39862509 - 39862565
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39862509 tgtaaattcctatgaatttcttatataaacccctataaattgggcaatttctttaga 39862565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 6257432 - 6257486
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  6257432 tgtaaatccctatgaatttcttatacaaacccctataaattgggcaatttcttta 6257486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 101 - 203
Target Start/End: Original strand, 614413 - 614515
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagannnnnnnattatttacttgacaatttctaatgtaaac-ccta 199  Q
    |||||||| ||| ||||||| ||||||||||||||||||||| |||||||||||||||       ||||||| |||| |||||||| |||||||| ||||    
T  614413 atgtaaattcctctgaattttttatataaatccctataaatttggcaatttctttagatttttttattatttgcttg-caatttcttatgtaaacaccta 614511  T
Q  200 taaa 203  Q
    ||||    
T  614512 taaa 614515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 16618592 - 16618646
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    |||||||||||||||||||||||||||||  |||||||||||| |||||| ||||    
T  16618592 tgtaaatccctatgaatttcttatataaactcctataaattggacaattttttta 16618646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 15631718 - 15631665
Alignment:
Q  104 taaatccctatgaatttcttatataaa-tccctataaattgggcaatttcttta 156  Q
    |||||||||||||||||||||||||||  ||||||||||||| |||||||||||    
T  15631718 taaatccctatgaatttcttatataaaccccctataaattggacaatttcttta 15631665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 42119729 - 42119672
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    |||||||| ||| ||||||||||||||||| | ||||||||||| |||||||||||||    
T  42119729 atgtaaattcctctgaatttcttatataaacctctataaattggacaatttctttaga 42119672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 29790240 - 29790296
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttag 157  Q
    |||||||| | ||||||||||||||||||| |  |||||||||||||||||||||||    
T  29790240 atgtaaattcttatgaatttcttatataaacctttataaattgggcaatttctttag 29790296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 197
Target Start/End: Original strand, 25560348 - 25560443
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagannnnnnnattatttacttgacaatttctaatgtaaaccc 197  Q
    |||||||||| ||| |||||||||||||||   ||||||||||| |||||||||||||       ||||||| |||| |||||||| ||||||||||    
T  25560348 atgtaaatccttataaatttcttatataaacatctataaattggacaatttctttagattattttattatttgcttg-caatttcttatgtaaaccc 25560443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 27916247 - 27916190
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    |||||||| ||| |||||||||||||||||  ||||||||||| |||||||| |||||    
T  27916247 atgtaaattcctctgaatttcttatataaactcctataaattgagcaatttcattaga 27916190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 36769095 - 36769152
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    |||||||| ||| ||||||||||||||||| | |||| |||| |||||||||||||||    
T  36769095 atgtaaattcctctgaatttcttatataaacctctatgaattaggcaatttctttaga 36769152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 156
Target Start/End: Original strand, 33271291 - 33271346
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    |||||||| ||  ||||||||||||||||| | ||||||||||| |||||||||||    
T  33271291 atgtaaattccgttgaatttcttatataaacctctataaattggacaatttcttta 33271346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 19322058 - 19322100
Alignment:
Q  116 aatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    |||||||||||||||  |||||||||||||||||| |||||||    
T  19322058 aatttcttatataaactcctataaattgggcaattactttaga 19322100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 10115267 - 10115210
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    |||||||| ||| || |||||||||||||| ||| ||||||| | |||||||||||||    
T  10115267 atgtaaattcctctggatttcttatataaaccccaataaattagacaatttctttaga 10115210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 6318479 - 6318536
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6318479 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 6318536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 101 - 156
Target Start/End: Original strand, 40277309 - 40277364
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  40277309 atgtaaatccctataaatttcttatataaatccctataaattgggcaatttcttta 40277364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 14186460 - 14186514
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14186460 tgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttta 14186514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 14942066 - 14942120
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14942066 tgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttta 14942120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 42769780 - 42769834
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  42769780 tgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttta 42769834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 19181654 - 19181600
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  19181654 tgtaaattcctatgaatttcttatataaacccctataaattgggcaatttcttta 19181600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 29846548 - 29846494
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  29846548 tgtaaatccctatgaatttcttatataaacccctataaattggacaatttcttta 29846494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 1387312 - 1387366
Alignment:
Q  104 taaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    ||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||    
T  1387312 taaatccctatgaatttcttagataaacccctataaattgggtaatttctttaga 1387366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 101 - 257
Target Start/End: Complemental strand, 3956679 - 3956522
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagannnnnnnattatttacttgacaatttctaatgtaaacc-cta 199  Q
    |||||||||||||||||||| ||||||||| |||| |||||||| ||||||||||| |       ||||||| |||| ||||||| |||||||||| |||    
T  3956679 atgtaaatccctatgaatttattatataaacccctgtaaattggacaatttctttaaaattttttattatttgcttg-caatttcaaatgtaaacctcta 3956581  T
Q  200 taaacgt-tcgcaannnnnnnnngcccgtactttacaataatcctggctccgccactga 257  Q
    |||| || | ||||         |||||  |||||||||||||||||||||||||||||    
T  3956580 taaatgtgttgcaatttttttttgcccgggctttacaataatcctggctccgccactga 3956522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 33009777 - 33009723
Alignment:
Q  104 taaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    ||||||||||||||||| |||||||||||| |||||||||| |||||||||||||    
T  33009777 taaatccctatgaatttgttatataaatccttataaattggacaatttctttaga 33009723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 14539725 - 14539782
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    |||||| | ||| |||||||||||||||||| |||||||||| |||||||||||||||    
T  14539725 atgtaatttcctctgaatttcttatataaattcctataaattaggcaatttctttaga 14539782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 43139839 - 43139797
Alignment:
Q  116 aatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    ||||||||||||||| |||||||||||| ||||||||||||||    
T  43139839 aatttcttatataaacccctataaattgagcaatttctttaga 43139797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 41674727 - 41674784
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    ||||||||| || ||||||| ||||||||| || |||||||||| |||||||||||||    
T  41674727 atgtaaatctctctgaattttttatataaacccttataaattggacaatttctttaga 41674784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 2888148 - 2888091
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    ||||||||| |||||||||| |||||||||  |||||||||||  |||||| ||||||    
T  2888148 atgtaaatctctatgaattttttatataaactcctataaattgaacaatttttttaga 2888091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 3597903 - 3597943
Alignment:
Q  116 aatttcttatataaatccctataaattgggcaatttcttta 156  Q
    |||||||| | |||||||||||||||||| |||||||||||    
T  3597903 aatttcttgtgtaaatccctataaattggacaatttcttta 3597943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 14309820 - 14309874
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14309820 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 14309874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 1727955 - 1728009
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  1727955 tgtaaatccctatgaatttcttatataaacccctataaattgagcaatttcttta 1728009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 9231876 - 9231930
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  9231876 tgtaaatctctatgaatttcttatataaacccctataaattgggcaatttcttta 9231930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 13627646 - 13627592
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  13627646 tgtaaatccctatgaatttcttatataaacccctataaattgagcaatttcttta 13627592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 24694673 - 24694727
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  24694673 tgtaaatccctatgaatttcttatataaactcctataaattgggcaatttcttta 24694727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 101 - 203
Target Start/End: Original strand, 13103139 - 13103241
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagannnnnnnattatttacttgacaatttctaatgtaaac-ccta 199  Q
    |||||||| ||| ||||||||||||||||| |  ||||||||||||||||||||||||       ||||||| |||| ||||||||||||||||| ||||    
T  13103139 atgtaaattcctctgaatttcttatataaacctttataaattgggcaatttctttagattttttgattatttgcttg-caatttctaatgtaaacaccta 13103237  T
Q  200 taaa 203  Q
    ||||    
T  13103238 taaa 13103241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 156
Target Start/End: Original strand, 28750671 - 28750726
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    |||||||| | | ||||||||||||||||| |||||||||||||||||||||||||    
T  28750671 atgtaaattcttctgaatttcttatataaacccctataaattgggcaatttcttta 28750726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 102 - 152
Target Start/End: Original strand, 24497596 - 24497646
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttc 152  Q
    ||||||| ||| ||||||||||||||||| |||||||||||||||||||||    
T  24497596 tgtaaattcctctgaatttcttatataaacccctataaattgggcaatttc 24497646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 34103792 - 34103735
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    |||||||| ||| ||||||||||||||||| || ||||||||||| ||||||||||||    
T  34103792 atgtaaattcctctgaatttcttatataaacccgtataaattgggaaatttctttaga 34103735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 158
Target Start/End: Complemental strand, 11212765 - 11212721
Alignment:
Q  114 tgaatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    ||||||| || ||||||||||||||||||||||||||||||||||    
T  11212765 tgaattttttctataaatccctataaattgggcaatttctttaga 11212721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 8412717 - 8412758
Alignment:
Q  116 aatttcttatataaatccctataaattgggcaatttctttag 157  Q
    |||||||||||||||  |||||||||||||||||||||||||    
T  8412717 aatttcttatataaacgcctataaattgggcaatttctttag 8412758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 27863806 - 27863749
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    ||||||||  || ||||||||||||||||| || |||||||||| |||||||||||||    
T  27863806 atgtaaatttctctgaatttcttatataaacccttataaattggacaatttctttaga 27863749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 52632624 - 52632570
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52632624 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 52632570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 1535877 - 1535823
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1535877 tgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttta 1535823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 36012207 - 36012261
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  36012207 tgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttta 36012261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 49284463 - 49284409
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  49284463 tgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttta 49284409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 101 - 197
Target Start/End: Original strand, 17888571 - 17888666
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagannnnnnnattatttacttgacaatttctaatgtaaaccc 197  Q
    |||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||       ||||||| |||| |||||||| ||||||||||    
T  17888571 atgtaaattcctatgaatttcttatataaccccctataaattgggcaatttctttagatttttttattatttgcttg-caatttcttatgtaaaccc 17888666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 34241099 - 34241045
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  34241099 tgtagatccctatgaatttcttatataaacccctataaattgggcaatttcttta 34241045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 46583563 - 46583617
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  46583563 tgtaaatccctatgaatttcttatataaacccctataaattaggcaatttcttta 46583617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 31377497 - 31377440
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    |||||||||||||||||||||||||||||  | |||||||||||||||||||||||||    
T  31377497 atgtaaatccctatgaatttcttatataaccctctataaattgggcaatttctttaga 31377440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 11054563 - 11054507
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttag 157  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||| |||||||    
T  11054563 atgtaaatccctatgaatttcttatataaacctctataaattgggcaatctctttag 11054507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 16338235 - 16338289
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||    
T  16338235 tgtaaattcctatgaattttttatataaatccctataaattggacaatttcttta 16338289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 25954856 - 25954802
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||| |||||||||||||||||||||  ||||||||||||||||||||||||    
T  25954856 tgtaaattcctatgaatttcttatataaactcctataaattgggcaatttcttta 25954802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 9742554 - 9742611
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    |||||||| ||| |||||||||||||| || |||||||||||||||||||||||||||    
T  9742554 atgtaaattcctctgaatttcttatattaacccctataaattgggcaatttctttaga 9742611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 102 - 158
Target Start/End: Complemental strand, 20818673 - 20818617
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    |||||||||||||||||||||||||||||  |||||||||||| |||||| ||||||    
T  20818673 tgtaaatccctatgaatttcttatataaactcctataaattggtcaatttttttaga 20818617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 37801286 - 37801340
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    |||||||  |||||||||| ||||||||||||||||||||||||||| |||||||    
T  37801286 tgtaaatttctatgaattttttatataaatccctataaattgggcaaattcttta 37801340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 12792252 - 12792309
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    ||||||||  || ||||||||||||||||| ||||||||||||||||||| |||||||    
T  12792252 atgtaaatttctctgaatttcttatataaacccctataaattgggcaattactttaga 12792309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 47084119 - 47084062
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    ||||||||  || ||||||||||||||||| |||||||||||||| ||||||||||||    
T  47084119 atgtaaatttctctgaatttcttatataaacccctataaattgggtaatttctttaga 47084062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 5780790 - 5780830
Alignment:
Q  116 aatttcttatataaatccctataaattgggcaatttcttta 156  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  5780790 aatttcttatataaatccttataaattgggcaatttcttta 5780830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 156
Target Start/End: Original strand, 322584 - 322625
Alignment:
Q  115 gaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    |||||||||||||||| ||||||||||||| |||||||||||    
T  322584 gaatttcttatataaacccctataaattggacaatttcttta 322625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 10094414 - 10094471
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    ||||||||  || ||||||||||||||||| |||||||||||||| ||||| ||||||    
T  10094414 atgtaaatttctctgaatttcttatataaacccctataaattgggtaatttatttaga 10094471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 158
Target Start/End: Complemental strand, 54090286 - 54090230
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    ||||||||||| ||||||| |||||||||  | ||||||||||||||||| ||||||    
T  54090286 tgtaaatccctctgaatttattatataaactcttataaattgggcaatttttttaga 54090230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 35019034 - 35018988
Alignment:
Q  110 cctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||||||||||||||||| || |||||||| || ||||||||||    
T  35019034 cctatgaatttcttatataaacccttataaattaggtaatttcttta 35018988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 50328902 - 50328848
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||| ||| | ||||||||||||||| | ||||||||||| |||||||||||    
T  50328902 tgtaaattcctcttaatttcttatataaacctctataaattggacaatttcttta 50328848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 36851409 - 36851446
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataa 139  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  36851409 tgtaaatccctatgaatttattatataaacccctataa 36851446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 46474101 - 46474044
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    |||||||| ||| ||||||| ||||||||| || |||||||||  |||||||||||||    
T  46474101 atgtaaattcctgtgaattttttatataaacccatataaattgtacaatttctttaga 46474044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 257
Target Start/End: Original strand, 17888700 - 17888728
Alignment:
Q  229 ctttacaataatcctggctccgccactga 257  Q
    |||||||||||||||||||||||||||||    
T  17888700 ctttacaataatcctggctccgccactga 17888728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 16523213 - 16523156
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  16523213 atgtaaatccctatgaatttcttatataaatccctataaattgggcaacttctttaga 16523156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 22324702 - 22324648
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22324702 tgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttta 22324648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 21525464 - 21525410
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  21525464 tgtaaatccctatgaatttcttatataaacccctataaattggacaatttcttta 21525410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 26021502 - 26021448
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  26021502 tgtaaatccctatgaatttcttatataaacccctataaattgggtaatttcttta 26021448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 35806900 - 35806846
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  35806900 tgtaaatctctatgaatttcttatataaacccctataaattgggcaatttcttta 35806846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 42013978 - 42013924
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  42013978 tgtaaatccctatgaatttcttatataaactcctataaattgggcaatttcttta 42013924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 42072534 - 42072480
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  42072534 tgtaaatccctatgaatttcttatataaacccctataaattggacaatttcttta 42072480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 33934391 - 33934445
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||    
T  33934391 tgtaaattcctatgaatttcttatataaacccctataaattgggcaattttttta 33934445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 104 - 157
Target Start/End: Complemental strand, 24065377 - 24065324
Alignment:
Q  104 taaatccctatgaatttcttatataaatccctataaattgggcaatttctttag 157  Q
    |||||| ||||||||||||||||||||  |||||||||||||||||||||||||    
T  24065377 taaatctctatgaatttcttatataaactcctataaattgggcaatttctttag 24065324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 16591396 - 16591449
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctt 154  Q
    ||||||||  ||| |||||||||||||||||| |||||||||||||||||||||    
T  16591396 atgtaaatttctaagaatttcttatataaatcactataaattgggcaatttctt 16591449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 43282872 - 43282929
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    |||||||| | | ||||||| |||||||||||||||||||||||| |||||| |||||    
T  43282872 atgtaaattcttctgaatttattatataaatccctataaattgggtaatttcattaga 43282929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 158
Target Start/End: Complemental strand, 21488172 - 21488116
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    ||||||| ||| ||||||||||||| ||| ||| ||||||||| |||||||||||||    
T  21488172 tgtaaattcctttgaatttcttatagaaaccccgataaattggacaatttctttaga 21488116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 153
Target Start/End: Original strand, 16819007 - 16819046
Alignment:
Q  114 tgaatttcttatataaatccctataaattgggcaatttct 153  Q
    ||||||||||||||||| |||||||||||||| |||||||    
T  16819007 tgaatttcttatataaacccctataaattgggtaatttct 16819046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 158
Target Start/End: Complemental strand, 2271289 - 2271245
Alignment:
Q  114 tgaatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    ||||||||||||||||| ||||||| ||| || ||||||||||||    
T  2271289 tgaatttcttatataaacccctatatattaggtaatttctttaga 2271245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 10576779 - 10576725
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10576779 tgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttta 10576725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 34259624 - 34259570
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  34259624 tgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttta 34259570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 34707222 - 34707168
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  34707222 tgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttta 34707168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 19334581 - 19334638
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    |||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  19334581 atgtaaatacctatgaatttcttatataaacccctataaattggacaatttctttaga 19334638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 101 - 203
Target Start/End: Original strand, 33057678 - 33057779
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagannnnnnnattatttacttgacaatttctaatgtaaaccctat 200  Q
    |||||||||||||||||||||||||||||  ||||||||||||  |||||||||||||       ||||||| |||| |||||||| ||||||| |||||    
T  33057678 atgtaaatccctatgaatttcttatataatcccctataaattgaacaatttctttagatttttttattatttgcttg-caatttcttatgtaaatcctat 33057776  T
Q  201 aaa 203  Q
    |||    
T  33057777 aaa 33057779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 24320461 - 24320515
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||| |||| |||||||||||||||| |||||||||||||||||||||||||    
T  24320461 tgtaaattcctacgaatttcttatataaacccctataaattgggcaatttcttta 24320515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 29555961 - 29556015
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||    
T  29555961 tgtaaattcctatgaatttcttatataaacccctataaattggacaatttcttta 29556015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 32876552 - 32876606
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    |||| |||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  32876552 tgtagatccctatgaatttcttatataaacccctataaattggacaatttcttta 32876606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 44164765 - 44164819
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    |||||||  |||||||||||||||||||| |||||||||||||||||||||||||    
T  44164765 tgtaaatttctatgaatttcttatataaacccctataaattgggcaatttcttta 44164819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 17303135 - 17303192
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    |||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||    
T  17303135 atgtaaattcctatgaatttcttatataaacccttgtaaattgggcaatttctttaga 17303192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 29238165 - 29238219
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||||||||||||||||||||||||| ||||| |||||||  ||||||||||    
T  29238165 tgtaaatccctatgaatttcttatataaacccctaaaaattggaaaatttcttta 29238219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 29981135 - 29981189
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    |||||||||||||||||||||||||||||   ||||||||||| |||||||||||    
T  29981135 tgtaaatccctatgaatttcttatataaacttctataaattggacaatttcttta 29981189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 10334285 - 10334228
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    |||||||| ||| |||||||||||||||||  | ||||||||||||||||||||||||    
T  10334285 atgtaaattcctctgaatttcttatataaactcttataaattgggcaatttctttaga 10334228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 15017880 - 15017823
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    |||||||| ||| |||||||||||||||||  | |||||||||| |||||||||||||    
T  15017880 atgtaaattcctctgaatttcttatataaacgcgtataaattggacaatttctttaga 15017823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 158
Target Start/End: Complemental strand, 9770753 - 9770709
Alignment:
Q  114 tgaatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    ||||||||||||||||| | |||| |||||| |||||||||||||    
T  9770753 tgaatttcttatataaaccactatgaattggacaatttctttaga 9770709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 29149570 - 29149624
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  29149570 tgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttta 29149624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 102 - 152
Target Start/End: Original strand, 48392428 - 48392478
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttc 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48392428 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttc 48392478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 101 - 197
Target Start/End: Complemental strand, 38859958 - 38859863
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagannnnnnnattatttacttgacaatttctaatgtaaaccc 197  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||       ||||||| |||| |||||||| ||||||||||    
T  38859958 atgtaaattcctatgaatttcttatataaacccctataaattgggcaatttttttagatttttttattatttgcttg-caatttcttatgtaaaccc 38859863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 101 - 156
Target Start/End: Complemental strand, 42456679 - 42456624
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  42456679 atgtaaattcctatgaatttcttatataaacccctataaattgggcaatttcttta 42456624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 3346892 - 3346838
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  3346892 tgtaaatccctatgaatttcttatataaacccctataaattggacaatttcttta 3346838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 7742801 - 7742855
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  7742801 tgtaaatccttatgaatttcttatataaacccctataaattgggcaatttcttta 7742855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 23908391 - 23908337
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  23908391 tgtaaattcctatgaatttcttatataaatccctataaattggacaatttcttta 23908337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 49902574 - 49902520
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  49902574 tgtaaatccctatgaatttcttatataaacccctataaatagggcaatttcttta 49902520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 5975094 - 5975040
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    |||||||||||| |||||||||||||||| ||||||||||| |||||||||||||    
T  5975094 tgtaaatccctaagaatttcttatataaacccctataaattaggcaatttcttta 5975040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 101 - 196
Target Start/End: Complemental strand, 30745451 - 30745357
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagannnnnnnattatttacttgacaatttctaatgtaaacc 196  Q
    ||||||||  || |||||||||| |||||||||||||||||||| ||||||||||| |       |||||||||||| |||||||| |||||||||    
T  30745451 atgtaaatttctctgaatttcttttataaatccctataaattggacaatttctttaaattttttgattatttacttg-caatttcttatgtaaacc 30745357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 101 - 196
Target Start/End: Complemental strand, 30766902 - 30766808
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagannnnnnnattatttacttgacaatttctaatgtaaacc 196  Q
    ||||||||  || |||||||||| |||||||||||||||||||| ||||||||||| |       |||||||||||| |||||||| |||||||||    
T  30766902 atgtaaatttctctgaatttcttttataaatccctataaattggacaatttctttaaattttttgattatttacttg-caatttcttatgtaaacc 30766808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 101 - 151
Target Start/End: Complemental strand, 37189747 - 37189697
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaattt 151  Q
    ||||||||| |||||||||||||||||||||| ||||||||||| ||||||    
T  37189747 atgtaaatctctatgaatttcttatataaatctctataaattggacaattt 37189697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 47022808 - 47022754
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    |||||||| ||||||||||||||||||||  |||||||||| |||||||||||||    
T  47022808 tgtaaatctctatgaatttcttatataaactcctataaattaggcaatttcttta 47022754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 42517316 - 42517374
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaat----ccctataaattgggcaatttcttta 156  Q
    |||||||||||||||||||||||||||||     |||||||||||||||||||||||||    
T  42517316 tgtaaatccctatgaatttcttatataaacaaacccctataaattgggcaatttcttta 42517374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 158
Target Start/End: Complemental strand, 5558402 - 5558359
Alignment:
Q  115 gaatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    |||||||||||||||| ||||||||||||| |||||||||||||    
T  5558402 gaatttcttatataaacccctataaattggacaatttctttaga 5558359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 10156038 - 10156092
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||| |||||||||||||||||||||   ||||||||||| |||||||||||    
T  10156038 tgtaaattcctatgaatttcttatataaacttctataaattggacaatttcttta 10156092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 10907669 - 10907726
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    |||||||| ||| ||||||||||||||||| ||||||||||  | |||||||||||||    
T  10907669 atgtaaattcctctgaatttcttatataaacccctataaatcagacaatttctttaga 10907726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 13132003 - 13131947
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttag 157  Q
    |||||||| ||| | ||||| ||||||||||| ||||||||||| ||||||||||||    
T  13132003 atgtaaattcctctaaattttttatataaatcactataaattggacaatttctttag 13131947  T

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Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 197
Target Start/End: Complemental strand, 26835445 - 26835350
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagannnnnnnattatttacttgacaatttctaatgtaaaccc 197  Q
    |||||||| | |||||||||||||||||||  |||||||||||  |||||| ||||||       ||||||| |||| |||||||| ||||||||||    
T  26835445 atgtaaattcatatgaatttcttatataaactcctataaattgaacaatttttttagattttttgattatttgcttg-caatttctcatgtaaaccc 26835350  T

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Target: scaffold0079 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 54625 - 54571
Alignment:
Q  102 tgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||    
T  54625 tgtaaattcctatgaattttttatataaatccctataaattggacaatttcttta 54571  T

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Target: scaffold0045 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 206
Target Start/End: Original strand, 34473 - 34578
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagannnnnnnattatttacttgacaatttctaatgtaaac-ccta 199  Q
    |||||||||||| ||||||  ||||||||||| ||||||||||| || ||||||||||       ||||||| ||| ||||||||| |||||||| ||||    
T  34473 atgtaaatccctctgaattctttatataaatctctataaattggacagtttctttagattttttgattatttgctt-acaatttcttatgtaaactccta 34571  T
Q  200 taaacgt 206  Q
    |||||||    
T  34572 taaacgt 34578  T

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Target: scaffold0086 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 20852 - 20909
Alignment:
Q  101 atgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttaga 158  Q
    |||||||| ||| ||||||||||||||||| | ||||||||||| |||||| ||||||    
T  20852 atgtaaattcctctgaatttcttatataaagctctataaattggacaatttttttaga 20909  T

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Target: scaffold0016 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 85592 - 85552
Alignment:
Q  116 aatttcttatataaatccctataaattgggcaatttcttta 156  Q
    ||||| ||||| ||||||||||||||||| |||||||||||    
T  85592 aattttttataaaaatccctataaattggacaatttcttta 85552  T

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