View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_512 (Length: 206)
Name: NF8260A_low_512
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_512 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 27442272 - 27442105
Alignment:
| Q |
20 |
gacattacaatggaggtagtggaagattcctatgatagtgttgcatcagaggtagtccaacaagttgctgctatggtacatgctgaagaagatgaagtcc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27442272 |
gacattacaatggaggtagtggaagattcctatgatagtgttgcatcagaggtagtccaacaagttgctgctatggtacatgctgaagaagatgaagtcc |
27442173 |
T |
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| Q |
120 |
aatccaaacaaactgaagaaaatgaagtccaaggtgtgcacattgagaagttccccgaatatgagtat |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27442172 |
aatccaaacaaactgaagaaaatgaagtccaaggtgtgcacattgagaagttccccgaatatgagtat |
27442105 |
T |
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Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 20 - 187
Target Start/End: Original strand, 12844365 - 12844532
Alignment:
| Q |
20 |
gacattacaatggaggtagtggaagattcctatgatagtgttgcatcagaggtagtccaacaagttgctgctatggtacatgctgaagaagatgaagtcc |
119 |
Q |
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| T |
12844365 |
gacattacaatggaggtagtggaagattcctatgatagtgttgcatcagaggtagtccaacaagttgctgctatggtacatgctgaagaagatgaagtcc |
12844464 |
T |
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| Q |
120 |
aatccaaacaaactgaagaaaatgaagtccaaggtgtgcacattgagaagttccccgaatatgagtat |
187 |
Q |
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| T |
12844465 |
aatccaaacaaactgaagaaaatgaagtccaaggtgtgcacattgagaagttccccgaatatgagtat |
12844532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 164; Significance: 7e-88; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 20 - 187
Target Start/End: Original strand, 45089 - 45256
Alignment:
| Q |
20 |
gacattacaatggaggtagtggaagattcctatgatagtgttgcatcagaggtagtccaacaagttgctgctatggtacatgctgaagaagatgaagtcc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45089 |
gacattacaatggaggtagtggaagattcctatgatagtgttacatcagaggtagtccaacaagttgctgctatggtacatgctgaagaagatgaagtcc |
45188 |
T |
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| Q |
120 |
aatccaaacaaactgaagaaaatgaagtccaaggtgtgcacattgagaagttccccgaatatgagtat |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45189 |
aatccaaacaaactgaagaaaatgaagtccaaggtgtgcacattgagaagttccccgaatatgagtat |
45256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 164; Significance: 7e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 20 - 187
Target Start/End: Original strand, 25098609 - 25098776
Alignment:
| Q |
20 |
gacattacaatggaggtagtggaagattcctatgatagtgttgcatcagaggtagtccaacaagttgctgctatggtacatgctgaagaagatgaagtcc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25098609 |
gacattacaatggaggtagtggaagattcctatgatagtgttgcatcagaggtagtccaacaagttgctgctatggtacatgctgaagaagatgaagtcc |
25098708 |
T |
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| Q |
120 |
aatccaaacaaactgaagaaaatgaagtccaaggtgtgcacattgagaagttccccgaatatgagtat |
187 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
25098709 |
aatccaaacaaactgaagaaaatgaagtccaagatgtgcacattgagaagttccccgaatatgagtat |
25098776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 164; Significance: 7e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 20 - 187
Target Start/End: Original strand, 50438538 - 50438705
Alignment:
| Q |
20 |
gacattacaatggaggtagtggaagattcctatgatagtgttgcatcagaggtagtccaacaagttgctgctatggtacatgctgaagaagatgaagtcc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50438538 |
gacattacaatggaggtagtggaagattcctatgatagtgtttcatcagaggtagtccaacaagttgctgctatggtacatgctgaagaagatgaagtcc |
50438637 |
T |
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| Q |
120 |
aatccaaacaaactgaagaaaatgaagtccaaggtgtgcacattgagaagttccccgaatatgagtat |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50438638 |
aatccaaacaaactgaagaaaatgaagtccaaggtgtgcacattgagaagttccccgaatatgagtat |
50438705 |
T |
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