View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_520 (Length: 204)
Name: NF8260A_low_520
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_520 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 22 - 186
Target Start/End: Original strand, 39080749 - 39080913
Alignment:
| Q |
22 |
aggtctttatgtattaggttcctaataagctctaaatatatattatatccttgtatatagttgtatcactgatcatcatcaattttaatataatttttct |
121 |
Q |
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| T |
39080749 |
aggtctttatgtattatgttcctaataagctctaaatatatattatatccttgtatatagttgtatcactgatcattatcaattttaatataatttttct |
39080848 |
T |
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| Q |
122 |
tgagttctaccctcaattctcaatctctttaaatgatttcatcccatttcacatctctttgattc |
186 |
Q |
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| T |
39080849 |
tgagttctaccctcaattctcaatctctttaaatgatttcatcccatttcacatctctttgattc |
39080913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 77 - 185
Target Start/End: Original strand, 39090169 - 39090275
Alignment:
| Q |
77 |
tatagttgtatcactgatcatcatcaattttaatataatttttcttgagttctaccctcaattctcaatctctttaaatgatttcatcccatttcacatc |
176 |
Q |
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||||||||||||||| ||||||||||||| |||||| |||||||||||||| |||||||| ||||||||||||||||||||||| | ||||||||| || |
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| T |
39090169 |
tatagttgtatcact--tcatcatcaatttcaatatactttttcttgagttccaccctcaactctcaatctctttaaatgatttcctaccatttcacctc |
39090266 |
T |
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| Q |
177 |
tctttgatt |
185 |
Q |
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| T |
39090267 |
tctttgatt |
39090275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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