View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_528 (Length: 201)
Name: NF8260A_low_528
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_528 |
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Alignment Details
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 26437884 - 26438045
Alignment:
| Q |
19 |
tctccaagatccaaaactttgaggttttcgcatttggcaatagcattaggcaatcgccccttcaattgatttccattgaaatttatggtctctaaaactc |
118 |
Q |
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| T |
26437884 |
tctcctagatccaaaacttccagttttttccatttggcaataacatgaggtaatggtcccgtcaattgatttccattcaaaatcatagtctctaaaactc |
26437983 |
T |
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| Q |
119 |
tcatctcaaaatagattttgggtatgattccaacaaggttgttcttttgtagatctaaaact |
180 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26437984 |
tcatctcaaaatagattttgggtatgattccaacaaggttgttcttttgtagatctaaaact |
26438045 |
T |
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Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 26451253 - 26451414
Alignment:
| Q |
19 |
tctccaagatccaaaactttgaggttttcgcatttggcaatagcattaggcaatcgccccttcaattgatttccattgaaatttatggtctctaaaactc |
118 |
Q |
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||||| ||||||||||||| || |||| |||||||||||| ||| ||| ||| | ||| |||||||||||||||| ||| | || ||||||||||||| |
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| T |
26451253 |
tctcctagatccaaaacttccagttttttccatttggcaataacatgaggtaatggtcccgtcaattgatttccattcaaaatcatagtctctaaaactc |
26451352 |
T |
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| Q |
119 |
tcatctcaaaatagattttgggtatgattccaacaaggttgttcttttgtagatctaaaact |
180 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26451353 |
tcatctcaaaatagattttgggtatgattccaacaaggttgttcttttgtagatctaaaact |
26451414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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