View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_58 (Length: 397)
Name: NF8260A_low_58
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_58 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 14877696 - 14878081
Alignment:
| Q |
1 |
gttgctttgatcaaggtaatttttcttttgcaacatctagtagtgtgtatacatataatcacaccaaacataaccctattcgatacaaagcaaattcaac |
100 |
Q |
| |
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|||||||| ||||||||| |||||||| ||||||||||| |||| || | ||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
14877696 |
gttgctttaatcaaggtattttttcttgcgcaacatctag--gtgtatacatatataatcacaccaaacataaccct---cgataaaaagcaaattcaac |
14877790 |
T |
|
| Q |
101 |
aaaaacatttttaaaggactacaacgaagatttaataatgccaaatttgtgatcacccttactaggctggttaatgttgttcttaagaacactatccaac |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
14877791 |
aaaaacatatttaaaggactacaacgaagatttaataatgccaaatttgtgatcacccttagtaggctggttaatgttgttcttaagaacactatccaac |
14877890 |
T |
|
| Q |
201 |
tctttaaccaacctctccatgacttgagttggcnnnnnnnctggtataaccaaacctttctctcctttatcatttgtaaaaggaatatgaaagacagctt |
300 |
Q |
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|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
14877891 |
tctttaaccaacctctccatgacttgagttggcaaaaaaactggtataaccaaacctttctctcctttatcatttgtaaatggaatatgaaagacagctt |
14877990 |
T |
|
| Q |
301 |
gaccaggaagagcaccatcccctcctttagctggtcctccataaacagctttcccccaaccaaaatcaatgtctcgaaatccagctcgtgt |
391 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
14877991 |
gaccaggaagagcaccatcccctcctttagctggtcctccataaacagctttcccccaaccaaaatcaacatctcgaaatccagctcgtgt |
14878081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 198 - 391
Target Start/End: Complemental strand, 14759852 - 14759659
Alignment:
| Q |
198 |
aactctttaaccaacctctccatgacttgagttggcnnnnnnnctggtataaccaaacctttctctcctttatcatttgtaaaaggaatatgaaagacag |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||| ||||| | ||||| |||||||| |||| |
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| T |
14759852 |
aactctttaaccaacctctccatgacttgagcaggcaagaaaaacggtataaccaaaccttcttctcctttagcatttttgaaaggtatatgaaatacag |
14759753 |
T |
|
| Q |
298 |
cttgaccaggaagagcaccatcccctcctttagctggtcctccataaacagctttcccccaaccaaaatcaatgtctcgaaatccagctcgtgt |
391 |
Q |
| |
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|||||||||||| |||| |||| ||||||||||| ||||||||| | |||||||||||||||||| |||| |||| || |||||| ||||| |
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| T |
14759752 |
cttgaccaggaatagcaacatcacctcctttagccattcctccatagagagctttcccccaaccaaattcaacatctccaagtccagcacgtgt |
14759659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 108 - 369
Target Start/End: Original strand, 14785943 - 14786204
Alignment:
| Q |
108 |
tttttaaaggactacaacgaagatttaataatgccaaatttgtgatcacccttactaggctggttaatgttgttcttaagaacactatccaactctttaa |
207 |
Q |
| |
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||||||||||||||||| ||||| ||| || || |||| | ||||| |||| |||||| |||| |||| ||||||| |||||||||| ||||||| |
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| T |
14785943 |
tttttaaaggactacaatgaagaaacaatgataccggattttttatcacacttagtaggcttgttagtgttactcttaagcacactatccatttctttaa |
14786042 |
T |
|
| Q |
208 |
ccaacctctccatgacttgagttggcnnnnnnnctggtataaccaaacctttctctcctttatcatttgtaaaaggaatatgaaagacagcttgaccagg |
307 |
Q |
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| |||||||||||||||||| |||| ||||||||||||||||| |||||||||| ||||| | ||||| ||||||||| ||| ||||||| |
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| T |
14786043 |
caaacctctccatgacttgatttggaaaataaaatggtataaccaaaccttcctctcctttagcatttttgaaaggtatatgaaagctagcaagaccagg |
14786142 |
T |
|
| Q |
308 |
aagagcaccatcccctcctttagctggtcctccataaacagctttcccccaaccaaaatcaa |
369 |
Q |
| |
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|| | ||||||| ||||| |||||||||||||||| | | ||||||||||||| |||||| |
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| T |
14786143 |
aatatcaccatctgctcctctagctggtcctccatagatgggtttcccccaaccataatcaa |
14786204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 163 - 369
Target Start/End: Original strand, 14766915 - 14767121
Alignment:
| Q |
163 |
taggctggttaatgttgttcttaagaacactatccaactctttaaccaacctctccatgacttgagttggcnnnnnnnctggtataaccaaacctttctc |
262 |
Q |
| |
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|||| ||||| |||||||||||||| |||||||| ||||||||||| ||| |||||||| |||||| ||| ||||||||||||||||| ||| |
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| T |
14766915 |
taggttggttgatgttgttcttaagcacactatctaactctttaacgaacttctccatggcttgagctggtaaacaaagtggtataaccaaaccttcctc |
14767014 |
T |
|
| Q |
263 |
tcctttatcatttgtaaaaggaatatgaaagacagcttgaccaggaagagcaccatcccctcctttagctggtcctccataaacagctttcccccaacca |
362 |
Q |
| |
|
||||||| ||||| | ||||| |||| |||| ||| |||||| | ||||||| | ||||||||||||||||| ||||| |||||||| ||||||||| |
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| T |
14767015 |
tcctttagcatttttgaaaggtatataaaagctagcaacaccaggtatagcaccaactcctcctttagctggtccaccatatacagcttttccccaacca |
14767114 |
T |
|
| Q |
363 |
aaatcaa |
369 |
Q |
| |
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|| |||| |
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| T |
14767115 |
aattcaa |
14767121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 154 - 258
Target Start/End: Original strand, 14873113 - 14873217
Alignment:
| Q |
154 |
cacccttactaggctggttaatgttgttcttaagaacactatccaactctttaaccaacctctccatgacttgagttggcnnnnnnnctggtataaccaa |
253 |
Q |
| |
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||||| || |||| |||||||| ||||||||||| |||| |||||||||||||| |||||||||||| ||| ||||||| ||||||||||||| |
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| T |
14873113 |
cacccatagtaggttggttaattttgttcttaagcacaccatccaactctttaatgaacctctccatggctttagttggcaaacaaactggtataaccaa |
14873212 |
T |
|
| Q |
254 |
acctt |
258 |
Q |
| |
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||||| |
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| T |
14873213 |
acctt |
14873217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 369
Target Start/End: Original strand, 14873265 - 14873313
Alignment:
| Q |
321 |
cctcctttagctggtcctccataaacagctttcccccaaccaaaatcaa |
369 |
Q |
| |
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|||||||||||||||||||||||| || ||| |||||||| ||||||| |
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| T |
14873265 |
cctcctttagctggtcctccataacaaggttttccccaaccgaaatcaa |
14873313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 114 - 391
Target Start/End: Original strand, 83864 - 84141
Alignment:
| Q |
114 |
aaggactacaacgaagatttaataatgccaaatttgtgatcacccttactaggctggttaatgttgttcttaagaacactatccaactctttaaccaacc |
213 |
Q |
| |
|
||||||||||||||||| ||||| || ||| |||| ||||||| || ||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
83864 |
aaggactacaacgaagaattaatgattccagattttctatcacccatagtaggcgagttaatgttgttcttaagaactttatccaactctttaaccaacc |
83963 |
T |
|
| Q |
214 |
tctccatgacttgagttggcnnnnnnnctggtataaccaaacctttctctcctttatcatttgtaaaaggaatatgaaagacagcttgaccaggaagagc |
313 |
Q |
| |
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|||| |||||||||||||| |||||||||| ||||||| |||||||||| ||||| ||||||| |||| || | || ||||||| || |
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| T |
83964 |
tctcgatgacttgagttggaaaaaaaactggtataacaaaaccttcctctcctttagcatttttaaaaggtatataaatggtagaaataccaggattagt |
84063 |
T |
|
| Q |
314 |
accatcccctcctttagctggtcctccataaacagctttcccccaaccaaaatcaatgtctcgaaatccagctcgtgt |
391 |
Q |
| |
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|||||| ||| || ||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||| |
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| T |
84064 |
accatctcctgctctagctaatcctccataaacagctttcccccaaccaaaatcaacatctctaaatccagcacgtgt |
84141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 254 - 391
Target Start/End: Original strand, 11999596 - 11999733
Alignment:
| Q |
254 |
acctttctctcctttatcatttgtaaaaggaatatgaaagacagcttgaccaggaagagcaccatcccctcctttagctggtcctccataaacagctttc |
353 |
Q |
| |
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||||| |||||||||| ||||| |||||| ||| ||||| ||| |||| ||| |||||| || ||||||||||||||||||||||| |||| |||| |
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| T |
11999596 |
accttcctctcctttaacatttttaaaagctatacgaaagcaagcaagaccgggattagcaccgtctcctcctttagctggtcctccatacacaggtttc |
11999695 |
T |
|
| Q |
354 |
ccccaaccaaaatcaatgtctcgaaatccagctcgtgt |
391 |
Q |
| |
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||||||||||| |||| |||| ||||||||| ||||| |
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|
| T |
11999696 |
ccccaaccaaactcaacatctctaaatccagcacgtgt |
11999733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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