View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_6 (Length: 609)
Name: NF8260A_low_6
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 7 - 603
Target Start/End: Complemental strand, 37821846 - 37821240
Alignment:
| Q |
7 |
aagaatattgaagttatgtaaagattccaggacttaacaagattctatacccaaccttgtattaagattttctatatctgtagctttaattttgcaggca |
106 |
Q |
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| T |
37821846 |
aagaatatggaagttatgtaaagattccaggacttaacaagattctatacccaaccttgtattaagattttctatatctgtagctttaattttgcaggca |
37821747 |
T |
|
| Q |
107 |
agtttaaattatttgatctggggctgcattataaaatgtgcaattgattttgtgaagatgtcgttgaattggtgttgcatcttaacttctgtgcacttga |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37821746 |
agtttaaattatttgatctggggctgcattataaaatgtgcaattgattgtgtgaagatgtcgttgaattggtgttgcatcttaacttctgtgcacttga |
37821647 |
T |
|
| Q |
207 |
gactgacattatgcatgttatacaacaactatctgtctgtacctagttactgcgtgtcaatttagttcagttggtgatttagcatgtgctataatactgg |
306 |
Q |
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| T |
37821646 |
gactgacattatgcatgttatacaacaactatctgtctgtacctagttactgcgtgtcaatttagttcagttggtgatttagcatgtgctataatactgg |
37821547 |
T |
|
| Q |
307 |
ccaaaactggccatagtactgttctttatttgattattattttgataatgtaatgttttttaacggttgatactgtaatactattcatctcttacatata |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37821546 |
ccaaaactggccatagtactgttctttatttgattattattttgataatgtaatgttttttaacggttgatactgtaatactattcatctcttacatata |
37821447 |
T |
|
| Q |
407 |
taatt------------atcatacataactatagcattttattaatgatatatgttaagagcaattccaaaactcatggtaatgtgatgtgactgctggc |
494 |
Q |
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||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37821446 |
taattatcacaccctttatcatacataactatagcattttaataatg--atatgttaagagcaattccaaaactcatggtaatgtgatgtgactgctggc |
37821349 |
T |
|
| Q |
495 |
ctcacaatttcttccgtagtactcgtatataaaagtccacttagtgggcattccactaaccactctacaaagttttaaatttttggtgtcattggtctcc |
594 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37821348 |
ctcacaatttcttccgtagtactcgtatataaaagtccacttagtggccattccactaaccactctacaaagttttaaatttttggtgtcattggtctcc |
37821249 |
T |
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| Q |
595 |
tatcatttc |
603 |
Q |
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| T |
37821248 |
tatcatttc |
37821240 |
T |
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