View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_60 (Length: 395)
Name: NF8260A_low_60
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_60 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 16 - 389
Target Start/End: Complemental strand, 52636330 - 52635957
Alignment:
| Q |
16 |
atgaagtgcagctttaatggtattgatgctttgcgtaaaaggttattacattaagaattgatgattatatcacgtgtacatgaaagctaatgtgaaaatt |
115 |
Q |
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| T |
52636330 |
atgaagtgcagctttaatggtattgctgctttgcgtaaaaggttattacattaagaattgatgattatatcacgtgtgcatgaaagctaatgtgaaaatt |
52636231 |
T |
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| Q |
116 |
attgttattcttgtttatcttgatataaaacacaatcgtgtttttaactcgtgctaaaacatttctaaattgnnnnnnnnnnnnctaatacgtgagagaa |
215 |
Q |
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| T |
52636230 |
attgttattcttgtttatcttgatataaaacacaatcgtgtttttaactcgtgctaaaacatttctaaattgttttttatttttctaatacgttagagta |
52636131 |
T |
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| Q |
216 |
atcaagtgaactttattttataaaatatcattgatggttatgtttgatgtgagaatgcattcaatattaaaattctaaaatattttaaaggggattcaac |
315 |
Q |
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| T |
52636130 |
atcaagttaactttattttataaaatatcattgatggttacgtttgatgtgagaatgcattcaatattaaaattctaaaatattttaaaggggattcaac |
52636031 |
T |
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| Q |
316 |
caccatctcatttgcatctgatttacttaaaagtgacgatggttgatcgaacctaaattttagcatctctcata |
389 |
Q |
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| T |
52636030 |
caccatctcatttgcatctgatttacttaaaactgatgatggttaatcgaacctaaattttagcatctctcata |
52635957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 26900242 - 26900282
Alignment:
| Q |
223 |
gaactttattttataaaatatcattgatggttatgtttgat |
263 |
Q |
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| T |
26900242 |
gaactttattctataaaatatcattgattgatatgtttgat |
26900282 |
T |
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