View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_64 (Length: 392)
Name: NF8260A_low_64
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_64 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 5 - 379
Target Start/End: Original strand, 40060980 - 40061368
Alignment:
| Q |
5 |
aaatgtaccactggtaatacatcgaagaagataaattaataatatcacatgcatagtttatttcttatatgcacaagagaaattacactggacaattgtg |
104 |
Q |
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| T |
40060980 |
aaatgtaccaccggtaatacatcgaagaagataaattaataatatcacatgcatagtttatttcttatatgcacaagagaaattacactggacaattgtg |
40061079 |
T |
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| Q |
105 |
tttt--------------ttaatatatttgctatatactgcaggaattattaggcagccgaagtggggtcatcttaaagatttgcacaaggccgtaaagc |
190 |
Q |
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| T |
40061080 |
ttttttaatatatattttttaatatatttgctatatactgcaggaattattaggcagccgaagtggggtcatcttaaagatttgcacaaggccgtaaagc |
40061179 |
T |
|
| Q |
191 |
tttgtgaggaagcgttaatagctacagaacccaagattacttctcttggtccaaacctagaggtagaggcggtttatattgaaatttttgcccgtttatc |
290 |
Q |
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| T |
40061180 |
tttgtgaggaagcgttaatagctacagaacctaagattacttctcttggtccaaacctagaggtagaggcggtttatattgaaatttttgcccgtttatc |
40061279 |
T |
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| Q |
291 |
ttatttcgcgtctttggatagaatttattttgtaactaaaactcatccagtttgtcaatctttctctggaaaattccctgcattgagta |
379 |
Q |
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| T |
40061280 |
ttatttcgcgtcttaggatagaatttattttgtaactaaaactcatccagtttgtcaatctttctctggaaaattccctgcattgagta |
40061368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 13 - 349
Target Start/End: Original strand, 40086887 - 40087228
Alignment:
| Q |
13 |
cactggtaatacatcgaagaagataaattaataatatcacatgcatagtttatttcttatatgcacaagagaaattacactggacaattgtgttttttaa |
112 |
Q |
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| T |
40086887 |
cactggtaatacatcgaagaagataaattgataatatcacatggatagtttatttcttatatgtagaagagaaattacactggacgattggattttttaa |
40086986 |
T |
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| Q |
113 |
tatatttgctatatactgcaggaattattaggcagccgaagtggggtcatcttaaagatttgcacaaggccgtaaagctttgtgaggaagcgttaatagc |
212 |
Q |
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| T |
40086987 |
tatcttcgctacatgctgcaggagttattaggcagccgaagtggggtcatcttaaagatgtgcacaaggccataaagctttgtgaagaagcattaatagc |
40087086 |
T |
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| Q |
213 |
tacagaacccaagattacttctcttggtccaaacctagaggtagaggcggtttatattgaaatttttgcccgttt-----atcttatttcgcgtctttgg |
307 |
Q |
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| T |
40087087 |
cgcagaacccaagattacttatcttggtccaaacctagaggtatagatggtttatattgaaatttttgttcgtttgaaacatcttattccgcgtcttagg |
40087186 |
T |
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| Q |
308 |
atagaatttattttgtaactaaaactcatccagtttgtcaat |
349 |
Q |
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| T |
40087187 |
atataatttattttgtaactaaaactcatctggtttgtcaat |
40087228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 26 - 280
Target Start/End: Original strand, 40079134 - 40079393
Alignment:
| Q |
26 |
tcgaagaagataaattaataatatcacatgcatagtttatttcttatatgcacaagagaaattacactggacaatt----gtgttt-tttaatatatttg |
120 |
Q |
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|||||||||||||||||||||||| ||| |||||||| |||||| ||| | ||||||||||||||||||||||| |||| | |||||||| | | |
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| T |
40079134 |
tcgaagaagataaattaataatattacacgcatagttattttcttttatttagaagagaaattacactggacaattttctgtgtgtgtttaatatctcta |
40079233 |
T |
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| Q |
121 |
ctatatactgcaggaattattaggcagccgaagtggggtcatcttaaagatttgcacaaggccgtaaagctttgtgaggaagcgttaatagctacagaac |
220 |
Q |
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| T |
40079234 |
ctatacgctgcaggaattattaggcagcaaaagtggggtcatcttaaagatgtacacaaggccataaagctttgtgaagaagcactaatagctactgatc |
40079333 |
T |
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| Q |
221 |
ccaagattacttctcttggtccaaacctagaggtagaggcggtttatattgaaatttttg |
280 |
Q |
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| T |
40079334 |
ccaagatttcatctcttggtcaaaacctagaggtataggtggtatgtattgaaatttttg |
40079393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 212
Target Start/End: Complemental strand, 22014313 - 22014230
Alignment:
| Q |
129 |
tgcaggaattattaggcagccgaagtggggtcatcttaaagatttgcacaaggccgtaaagctttgtgaggaagcgttaatagc |
212 |
Q |
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| T |
22014313 |
tgcaggagatattagacagcccaaatggggtcatcttaaagatttgcacaaggccataaagctttgtgaagaagcattgatagc |
22014230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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