View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_65 (Length: 388)
Name: NF8260A_low_65
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_65 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 25 - 384
Target Start/End: Complemental strand, 47720849 - 47720490
Alignment:
| Q |
25 |
cagatcaacccaaatgggttaatgttgatgacaattgtttaagcaaccctattaaaactataattggaagcttacttgagtcttggatctcaaatttatc |
124 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47720849 |
cagatcaacccaaatggattaatgttgatgacaattgtttaagcaaccctattaaaactataattggaagcttacttgagtcttggatctcaaatttatc |
47720750 |
T |
|
| Q |
125 |
aggttacattgtaagtgcaagcaacgtccaccttgtcgagcttcatatcattcatcgatgacttctatttgctaaggattaactttcaaatggttatttg |
224 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47720749 |
aggttacattgtaagtgcaagtaacgtccaccttgtcgagcttcatatcattcatcgatgacttctatttgctaaggattaactttcaaatggttatttg |
47720650 |
T |
|
| Q |
225 |
ctacacaaatttatttcgatgtgtccacatccttaaggagctactactctcggattaaccattgtattctaacttcttcaatacaacaataatttctagt |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47720649 |
ctacacaaatttatttcgatgtgtccacatccttaaggagctactactcttggattaaccattgtattctaacttcttcaatacaacaataatttctagt |
47720550 |
T |
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| Q |
325 |
gatcccaatcatattcaagcccttccattgttctacctcctatatattcaacaccaaact |
384 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
47720549 |
gatccgaatcatattcaagcccttccattgttctacctcctatatattcattaccaaact |
47720490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 25 - 384
Target Start/End: Complemental strand, 47727841 - 47727482
Alignment:
| Q |
25 |
cagatcaacccaaatgggttaatgttgatgacaattgtttaagcaaccctattaaaactataattggaagcttacttgagtcttggatctcaaatttatc |
124 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47727841 |
cagatcaacccaaatggattaatgttgatgacaattgtttaagcaaccctattaaaactataattggaagcttacttgagtcttggatctcaaatttatc |
47727742 |
T |
|
| Q |
125 |
aggttacattgtaagtgcaagcaacgtccaccttgtcgagcttcatatcattcatcgatgacttctatttgctaaggattaactttcaaatggttatttg |
224 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47727741 |
aggttacattgtaagtgcaagtaacgtccaccttgtcgagcttcatatcattcatcgatgacttctatttgctaaggattaactttcaaatggttatttg |
47727642 |
T |
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| Q |
225 |
ctacacaaatttatttcgatgtgtccacatccttaaggagctactactctcggattaaccattgtattctaacttcttcaatacaacaataatttctagt |
324 |
Q |
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| T |
47727641 |
ctacacaaatttatttcgatgtgtccacatccttaaggagctactactcttggattaaccattgtattctaacttcttcaatacaacaataatttctagt |
47727542 |
T |
|
| Q |
325 |
gatcccaatcatattcaagcccttccattgttctacctcctatatattcaacaccaaact |
384 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
47727541 |
gatccgaatcatattcaagcccttccattgttctacctcctatatattcattaccaaact |
47727482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 223 - 384
Target Start/End: Complemental strand, 47753572 - 47753411
Alignment:
| Q |
223 |
tgctacacaaatttatttcgatgtgtccacatccttaaggagctactactctcggattaaccattgtattctaacttcttcaatacaacaataatttcta |
322 |
Q |
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||||||| |||||| || |||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
47753572 |
tgctacataaatttgctttgatgtgtccatatccttaaggagctcctactctcggattaaccattgtattttaacttcttcaatacagcaataatttcta |
47753473 |
T |
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| Q |
323 |
gtgatcccaatcatattcaagcccttccattgttctacctcctatatattcaacaccaaact |
384 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
47753472 |
gtgatctgaatcatattcaagcccttccattgttctacctcctatatattcattaccaaact |
47753411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 29 - 187
Target Start/End: Complemental strand, 47753729 - 47753572
Alignment:
| Q |
29 |
tcaacccaaatgggttaatgttgatgacaattgtttaagcaaccctattaaaactataattggaagcttacttgagtcttggatctcaaatttatcaggt |
128 |
Q |
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|||||| |||||||||||| | |||||||||||||||||||||||||||| | ||||| ||||| |||||||| |||||||||||||||||||||||||| |
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| T |
47753729 |
tcaacctaaatgggttaatatcgatgacaattgtttaagcaaccctattacagctatatttggaggcttactttagtcttggatctcaaatttatcaggt |
47753630 |
T |
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| Q |
129 |
tacattgtaagtgcaagcaacgtccaccttgtcgagcttcatatcattcatcgatgact |
187 |
Q |
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| T |
47753629 |
tacattacaagtgccag-tatgttcaccttgtcgagcttcatatcattcatcgatgact |
47753572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 104 - 180
Target Start/End: Complemental strand, 47709557 - 47709481
Alignment:
| Q |
104 |
gtcttggatctcaaatttatcaggttacattgtaagtgcaagcaacgtccaccttgtcgagcttcatatcattcatc |
180 |
Q |
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|||||||||||||||||||||| |||||||| | |||||| || |||| |||||| ||||||||||||||||||| |
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| T |
47709557 |
gtcttggatctcaaatttatcaacttacattgcaggtgcaattaaagtcctccttgttgagcttcatatcattcatc |
47709481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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