View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8260A_low_7 (Length: 597)
Name: NF8260A_low_7
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_7 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 248 - 597
Target Start/End: Original strand, 39393229 - 39393582
Alignment:
| Q |
248 |
gtccacaaaacattattctatttaaaaagacggttgatatgagagggagagagtatttggtcacatttaacattgttggtttgagacggtg--------c |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| | |
|
|
| T |
39393229 |
gtccacaaaacattattctatttaaaaagacggttgatatgagagggagagaggattt----------aacattgttggtttgagacggtgtatgtgagc |
39393318 |
T |
|
| Q |
340 |
cggttaaaggctgca---attgaa---gaaaaatattatagttaatgttcaaactttattcttaacgaccaaggacattggttggttcgacgttgattcc |
433 |
Q |
| |
|
||||| || |||||| |||||| ||||||||||||||||||| || || |||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
39393319 |
cggttgaaagctgcagcaattgaattagaaaaatattatagttaatcttgaagctttattcttaacgactaaggacattggttggttcgacgttgattcc |
39393418 |
T |
|
| Q |
434 |
gtccaaagtccaatatatcttccaattccaaactattttttcttctcattttcattcacttagcctcctataccacaaggtaa-ccccgtcaacctagta |
532 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39393419 |
gtcaaaagtccaatatatcttccaattccaaactattttttcttctcattttcattcacttagcctcctataccacaaggtaacccccgtcaacctagta |
39393518 |
T |
|
| Q |
533 |
cacacgttcttttgctctttttctcctatattcctgtctcattactttttccaacattctaatta |
597 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
39393519 |
cacacgttcttttgctctttttctcctatattcctgtctcattac-ttttccaacattctaatta |
39393582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 40 - 130
Target Start/End: Complemental strand, 27326206 - 27326118
Alignment:
| Q |
40 |
acatcaagagggtgtaaattaggtgcaagagacaaatttaattctaaagcatcaaagaaaattttcttagtagaagactaagcgggtcata |
130 |
Q |
| |
|
|||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27326206 |
acatgaagagggtgtgaattaggtgcaaga--caaatttaattctaaagcatcaaagaaaattttctcagtagaagactaagcgggtcata |
27326118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 40 - 130
Target Start/End: Complemental strand, 41596945 - 41596851
Alignment:
| Q |
40 |
acatcaagagggtgtaaattaggtgcaagagacaaatttaattctaaagcatcaaagaaaattttcttagta----gaagactaagcgggtcata |
130 |
Q |
| |
|
||||||||||||||| |||||||| ||||| ||||||| |||| |||||||||||||||||||||| |||| |||||||||| |||||||| |
|
|
| T |
41596945 |
acatcaagagggtgttgattaggtgaaagaggcaaatttgattccaaagcatcaaagaaaattttctcagtatgttgaagactaagtgggtcata |
41596851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University