View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8260A_low_79 (Length: 369)

Name: NF8260A_low_79
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8260A_low_79
NF8260A_low_79
[»] chr7 (3 HSPs)
chr7 (10-357)||(2626038-2626385)
chr7 (166-357)||(8295057-8295248)
chr7 (162-271)||(27727547-27727656)
[»] chr4 (1 HSPs)
chr4 (40-357)||(18285485-18285802)
[»] chr6 (1 HSPs)
chr6 (131-351)||(15907369-15907590)
[»] scaffold0627 (1 HSPs)
scaffold0627 (7-86)||(9220-9299)
[»] scaffold0023 (1 HSPs)
scaffold0023 (211-357)||(138666-138812)
[»] chr2 (1 HSPs)
chr2 (256-324)||(27362221-27362289)
[»] chr8 (1 HSPs)
chr8 (25-90)||(30880948-30881013)
[»] chr1 (2 HSPs)
chr1 (28-60)||(9908782-9908814)
chr1 (166-302)||(22162282-22162418)


Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 10 - 357
Target Start/End: Original strand, 2626038 - 2626385
Alignment:
Q  10 cagccacctatccttaattggataaaatgtaatatagatggagcttctaaaggtaatcctggtccctcctcttgtggaggtgttgttagagactgtgatg 109  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  2626038 cagccacctatccttaatttgataaaatgtaatatagatggagcttctaaaggtaatcctggtccctcctcttgtggaggtgttgttggagactgtaatg 2626137  T
Q  110 ctaaattcttaggagccttttcttttaatcttggcttaggaaactcactcactgctgagcttaatggagccatgataacaatataattggattctcaaaa 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2626138 ctaaattcttaggagccttttcttttaatcttggcttaggaaactccctcactgctaagcttaatggagccatgataacaatataattggattctcaaaa 2626237  T
Q  210 gggttggaatcacttatggattgaaacaggctcaatgttagtcactttggctttcaagtctaaatccattgtgccttggcacttaaggaataggtgggat 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2626238 gggttggaatcacttatggattgaaacaggctcaatgttagtcactttggctttcaagtctaaatccattgtgccttggcacttaaggaataggtgggat 2626337  T
Q  310 aactgtttacatttactctcctcaatgtcttttattgtttctcatatt 357  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2626338 aactgtttacatttactctcctcaatgccttttattgtttctcatatt 2626385  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 357
Target Start/End: Complemental strand, 8295248 - 8295057
Alignment:
Q  166 gagcttaatggagccatgataacaatataattggattctcaaaagggttggaatcacttatggattgaaacaggctcaatgttagtcactttggctttca 265  Q
    ||||||||||||||||||||  ||||  |||| | |||||||||||| ||| ||||| | ||| | |||||||  || ||||| || |||   |||||||    
T  8295248 gagcttaatggagccatgatggcaattgaattcgcttctcaaaaggggtggcatcacctttggctagaaacagattctatgttggtaactgcagctttca 8295149  T
Q  266 agtctaaatccattgtgccttggcacttaaggaataggtgggataactgtttacatttactctcctcaatgtcttttattgtttctcatatt 357  Q
    ||||||   | || || |||||||||||||| ||||| ||| | || ||||| ||| |   |||||| ||||||||| ||||  ||||||||    
T  8295148 agtctatcacgatcgttccttggcacttaagaaatagatggcaaaattgttttcatctctgctcctctatgtctttttttgtaactcatatt 8295057  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 271
Target Start/End: Original strand, 27727547 - 27727656
Alignment:
Q  162 tgctgagcttaatggagccatgataacaatataattggattctcaaaagggttggaatcacttatggattgaaacaggctcaatgttagtcactttggct 261  Q
    ||||||||||||||||||||||||  ||||  |||| | |||||||||||| ||| ||||| | ||| | |||||||  || ||||| || |||   |||    
T  27727547 tgctgagcttaatggagccatgatggcaattgaattcgcttctcaaaaggggtggcatcacctttggctagaaacagattctatgttggtaactgcagct 27727646  T
Q  262 ttcaagtcta 271  Q
    ||||||||||    
T  27727647 ttcaagtcta 27727656  T

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Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 40 - 357
Target Start/End: Original strand, 18285485 - 18285802
Alignment:
Q  40 aatatagatggagcttctaaaggtaatcctggtccctcctcttgtggaggtgttgttagagactgtgatgctaaattcttaggagccttttcttttaatc 139  Q
    |||||||||||||| || |||||||| ||||| || || ||||||||||| ||  ||||||| ||| ||||| | ||| |||||||||| |||||||| |    
T  18285485 aatatagatggagcatccaaaggtaaccctgggccttcttcttgtggaggggtgtttagagattgtaatgctgacttcctaggagccttctcttttaacc 18285584  T
Q  140 ttggcttaggaaactcactcactgctgagcttaatggagccatgataacaatataattggattctcaaaagggttggaatcacttatggattgaaacagg 239  Q
    ||||| | || ||||| || |  ||||| || |||||||| || ||| |  || || |||  ||||  || ||||||||||| || ||||||||||||      
T  18285585 ttggcattggtaactctctgatagctgaactcaatggagcaataatagctgtagaaatggcatctcttaaaggttggaatcaattgtggattgaaacaaa 18285684  T
Q  240 ctcaatgttagtcactttggctttcaagtctaaatccattgtgccttggcacttaaggaataggtgggataactgtttacatttactctcctcaatgtct 339  Q
     || |||||||||||||| ||||| || || |||||||| ||||||||| ||||||| || | |||||| || ||||||||| |  | ||||||||||||    
T  18285685 ttctatgttagtcactttagcttttaaatcaaaatccatagtgccttggaacttaagaaacaagtgggaaaattgtttacatctgatttcctcaatgtct 18285784  T
Q  340 tttattgtttctcatatt 357  Q
    ||||| ||| ||||||||    
T  18285785 tttatggttactcatatt 18285802  T

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Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 131 - 351
Target Start/End: Complemental strand, 15907590 - 15907369
Alignment:
Q  131 cttttaatcttggcttaggaaactcactcactgctgagcttaatggagccatgataacaatataattggattctcaaaagggttggaatcacttatggat 230  Q
    |||||||||||||| |||| || |||||||||||| |||| |||||||| ||| || ||||| |  ||| ||||||||| |||||||||||||||| |||    
T  15907590 cttttaatcttggcataggcaattcactcactgctaagctcaatggagctatggtagcaatagagatggcttctcaaaaaggttggaatcacttattgat 15907491  T
Q  231 tgaaacaggctcaatgttagtcactttggctttcaagtc-taaatccattgtgccttggcacttaaggaataggtgggataactgtttacatttactctc 329  Q
    ||||||||  |||||| |||| ||  ||||||| |||||  ||| ||||||| | |||| |  |||||||||| |||||||| |||||||| ||| | ||    
T  15907490 tgaaacagattcaatgctagttacaatggcttttaagtcaaaaaaccattgttctttggaatctaaggaatagatgggataattgtttacacttagtttc 15907391  T
Q  330 ctcaatgtcttttattgtttct 351  Q
     ||||| ||||| |||||||||    
T  15907390 ttcaatatctttcattgtttct 15907369  T

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Target: scaffold0627 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 9220 - 9299
Alignment:
Q  7 tggcagccacctatccttaattggataaaatgtaatatagatggagcttctaaaggtaatcctggtccctcctcttgtgg 86  Q
    |||||||| ||||||||||| ||| |||||||||||||| |||||||||| |||||||| ||||||| ||  ||||||||    
T  9220 tggcagccccctatccttaactgggtaaaatgtaatatatatggagcttcaaaaggtaaccctggtctctaatcttgtgg 9299  T

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Target: scaffold0023 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 211 - 357
Target Start/End: Complemental strand, 138812 - 138666
Alignment:
Q  211 ggttggaatcacttatggattgaaacaggctcaatgttagtcactttggctttcaagtctaaatccattgtgccttggcacttaaggaataggtgggata 310  Q
    |||||||||||||||||| | ||||| |  |||||||| || || |||||||| || ||||     ||||| |||||||| ||||| || || ||||| |    
T  138812 ggttggaatcacttatggctggaaactgattcaatgttggtgaccttggcttttaaatctatgaagattgttccttggcaattaagaaacagatgggaaa 138713  T
Q  311 actgtttacatttactctcctcaatgtcttttattgtttctcatatt 357  Q
    |||||||||||||| | || |||||||||||| ||||  ||||||||    
T  138712 actgtttacatttaatatcatcaatgtctttttttgtaactcatatt 138666  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 27362289 - 27362221
Alignment:
Q  256 ttggctttcaagtctaaatccattgtgccttggcacttaaggaataggtgggataactgtttacattta 324  Q
    |||||||||||||| ||||| ||||||||||||||  | |||||||||||||| |||||  ||||||||    
T  27362289 ttggctttcaagtcaaaatctattgtgccttggcaactgaggaataggtgggagaactgcatacattta 27362221  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 30881013 - 30880948
Alignment:
Q  25 aattggataaaatgtaatatagatggagcttctaaaggtaatcctggtccctcctcttgtggaggt 90  Q
    |||||| | ||||||||||| ||||| ||||| || |||||||| || ||||| ||||||||||||    
T  30881013 aattgggttaaatgtaatattgatggtgcttccaatggtaatcccggaccctcatcttgtggaggt 30880948  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 60
Target Start/End: Original strand, 9908782 - 9908814
Alignment:
Q  28 tggataaaatgtaatatagatggagcttctaaa 60  Q
    |||||||||||||| ||||||||||||||||||    
T  9908782 tggataaaatgtaacatagatggagcttctaaa 9908814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 302
Target Start/End: Complemental strand, 22162418 - 22162282
Alignment:
Q  166 gagcttaatggagccatgataacaatataattggattctcaaaagggttggaatcacttatggattgaaacaggctcaatgttagtcactttggctttca 265  Q
    ||||||||||||||||||||  ||||  |||| | |||||||||||| ||| ||||| | ||| | |||||||  || ||||| || |||   |||||||    
T  22162418 gagcttaatggagccatgatggcaattgaattcgcttctcaaaaggggtggcatcacctttggctagaaacagattctatgttggtaactgcagctttca 22162319  T
Q  266 agtctaaatccattgtgccttggcacttaaggaatag 302  Q
    ||||||   | || || |||||||||||||| |||||    
T  22162318 agtctatcacgatcgttccttggcacttaagaaatag 22162282  T

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