View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8260A_low_8 (Length: 569)

Name: NF8260A_low_8
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8260A_low_8
NF8260A_low_8
[»] chr7 (8 HSPs)
chr7 (120-569)||(3237220-3237677)
chr7 (7-123)||(3237074-3237190)
chr7 (241-311)||(7399821-7399891)
chr7 (457-514)||(21164765-21164822)
chr7 (440-498)||(12653335-12653393)
chr7 (451-505)||(44941414-44941468)
chr7 (453-501)||(3337272-3337320)
chr7 (440-516)||(40187626-40187702)
[»] chr6 (8 HSPs)
chr6 (239-312)||(30326661-30326734)
chr6 (241-340)||(2248671-2248770)
chr6 (241-309)||(342938-343006)
chr6 (473-516)||(7979746-7979789)
chr6 (241-312)||(24396825-24396896)
chr6 (451-516)||(16890449-16890514)
chr6 (241-309)||(31597575-31597643)
chr6 (440-488)||(35110077-35110125)
[»] chr1 (16 HSPs)
chr1 (241-310)||(31963044-31963113)
chr1 (241-312)||(44698018-44698089)
chr1 (440-514)||(44068853-44068927)
chr1 (241-305)||(27262796-27262860)
chr1 (241-307)||(42592735-42592801)
chr1 (472-512)||(45885317-45885357)
chr1 (257-312)||(26761237-26761292)
chr1 (465-516)||(48131243-48131294)
chr1 (442-512)||(19396183-19396253)
chr1 (447-489)||(34599916-34599958)
chr1 (241-307)||(44529249-44529315)
chr1 (258-310)||(12807036-12807087)
chr1 (464-516)||(30678827-30678879)
chr1 (441-505)||(31962453-31962517)
chr1 (440-516)||(33153870-33153946)
chr1 (273-309)||(42479466-42479502)
[»] chr8 (10 HSPs)
chr8 (241-312)||(32615823-32615894)
chr8 (235-312)||(29912126-29912203)
chr8 (241-312)||(38813709-38813780)
chr8 (245-312)||(42964773-42964839)
chr8 (442-498)||(13958824-13958880)
chr8 (241-312)||(13521759-13521830)
chr8 (241-312)||(13611294-13611365)
chr8 (241-308)||(26738526-26738593)
chr8 (241-302)||(41909447-41909508)
chr8 (440-492)||(7839108-7839160)
[»] chr3 (3 HSPs)
chr3 (235-312)||(31732121-31732198)
chr3 (442-500)||(41113187-41113245)
chr3 (448-516)||(48376830-48376898)
[»] chr4 (7 HSPs)
chr4 (245-309)||(11123453-11123517)
chr4 (241-309)||(37626931-37626999)
chr4 (235-310)||(26009726-26009801)
chr4 (258-312)||(23568062-23568116)
chr4 (245-307)||(42098913-42098975)
chr4 (475-516)||(20096295-20096336)
chr4 (475-516)||(41897578-41897619)
[»] chr2 (9 HSPs)
chr2 (235-311)||(11074549-11074625)
chr2 (463-517)||(41939121-41939175)
chr2 (246-343)||(40142006-40142103)
chr2 (440-505)||(40797370-40797435)
chr2 (258-310)||(8741046-8741098)
chr2 (463-514)||(34364508-34364559)
chr2 (443-517)||(20239337-20239411)
chr2 (241-310)||(1944731-1944798)
chr2 (235-307)||(37426568-37426640)
[»] chr5 (8 HSPs)
chr5 (241-312)||(844800-844871)
chr5 (241-312)||(19608763-19608834)
chr5 (444-516)||(1512850-1512922)
chr5 (440-516)||(3156529-3156605)
chr5 (440-516)||(10199014-10199090)
chr5 (442-517)||(11017170-11017245)
chr5 (475-512)||(2642788-2642825)
chr5 (463-516)||(20370143-20370196)
[»] scaffold0161 (1 HSPs)
scaffold0161 (440-505)||(26704-26769)
[»] scaffold0074 (1 HSPs)
scaffold0074 (244-312)||(29748-29816)
[»] scaffold0445 (1 HSPs)
scaffold0445 (440-517)||(4464-4541)


Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 120 - 569
Target Start/End: Original strand, 3237220 - 3237677
Alignment:
Q  120 tcaacggaagtggctgcaggtttgcaacctagaagtccatattcattcattaagtccaagcaatttttcctttgnnnnnnnnn--gggaacaatcgataa 217  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||           ||||||||| |||||    
T  3237220 tcaacggaagtggctgcaggtttgcaaccttgaagtccatattcattcattaagtccaagcaatttttcctttgaaaaaaaaaaagggaacaattgataa 3237319  T
Q  218 cttttatgtnnnnnnnnttgctctttaatgtttcaataggttgaatacacaaaatccaagataaaatttgcattttaaacttcttatcaagtgccattga 317  Q
    |||| ||||        ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  3237320 ctttcatgtaaaaaaaattgctctttgatgtttcaataggttgaatacacaaaatccaagataaaatttgcattttaaactttttatcaagtgtcattga 3237419  T
Q  318 ggaaaagggcacttgttagcatttctttaattatgcgtttctctcgaaagtgtatataaataattgtttctctttggtttgtcgttcacgatattgagct 417  Q
    |  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3237420 gacaaagggcacttgttagcatttctttaattatgtgtttctctcgaaagtgtatataaataattgtttctctttggtctgtcgttcacgatattgagct 3237519  T
Q  418 caagatttactct------tcnnnnnnngtggtgttcgggattcgaaccttaaaccttatatttattatgcattatccctgccaactaagttaatctcac 511  Q
    |||||||||||||      |        |||||||||||||||||||||| | |||||| ||||||||||||||||| ||||||||| ||||||||||||    
T  3237520 caagatttactcttttttctttttttttgtggtgttcgggattcgaacctcagaccttacatttattatgcattatctctgccaactgagttaatctcac 3237619  T
Q  512 gaggattactcaaagtttactctttcaatagggttaagaacccctctcaatatatatt 569  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3237620 ggggattactcaaagtttactctttcaatagggttaagaacccctctcaatatatatt 3237677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 7 - 123
Target Start/End: Original strand, 3237074 - 3237190
Alignment:
Q  7 tcaaattcctcgactactgagtattgaatgtataaatatgttgagaaccttcattctttgaactagctttttgaatgtgattcaaacacatttaatatga 106  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3237074 tcaaattcctcgactactaagtattgaatgtataaatatgttgagaaccttcattctttgaactagctttttgaatgtgattcaaacacatttaatatga 3237173  T
Q  107 tatgagagctggttcaa 123  Q
    |||||||||||||||||    
T  3237174 tatgagagctggttcaa 3237190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 311
Target Start/End: Complemental strand, 7399891 - 7399821
Alignment:
Q  241 tttaatgtttcaataggttgaatacacaaaatccaagataaaatttgcattttaaacttcttatcaagtgc 311  Q
    ||||||||||||||  |||||||| ||||  |||||||||||  || || |||||||||||||||||||||    
T  7399891 tttaatgtttcaatgtgttgaataaacaacttccaagataaaccttccactttaaacttcttatcaagtgc 7399821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 457 - 514
Target Start/End: Original strand, 21164765 - 21164822
Alignment:
Q  457 aaccttaaaccttatatttattatgcattatccctgccaactaagttaatctcacgag 514  Q
    ||||| ||||||||||| ||||||||||||||| | |||||| |||||| ||||||||    
T  21164765 aacctcaaaccttatatatattatgcattatccataccaactgagttaagctcacgag 21164822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 440 - 498
Target Start/End: Complemental strand, 12653393 - 12653335
Alignment:
Q  440 gtggtgttcgggattcgaaccttaaaccttatatttattatgcattatccctgccaact 498  Q
    ||||||| ||| |||| ||||  |||||||  |||||||||||||||||||||||||||    
T  12653393 gtggtgtccggaattcaaaccccaaaccttgcatttattatgcattatccctgccaact 12653335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 505
Target Start/End: Original strand, 44941414 - 44941468
Alignment:
Q  451 gattcgaaccttaaaccttatatttattatgcattatccctgccaactaagttaa 505  Q
    |||| ||||||||||||||  || ||||||||||||||||| |||||| ||||||    
T  44941414 gatttgaaccttaaaccttgcatatattatgcattatccctaccaactgagttaa 44941468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 453 - 501
Target Start/End: Original strand, 3337272 - 3337320
Alignment:
Q  453 ttcgaaccttaaaccttatatttattatgcattatccctgccaactaag 501  Q
    |||||||||| ||||||| |||||||||||||| || || |||||||||    
T  3337272 ttcgaaccttgaaccttacatttattatgcattgtctctaccaactaag 3337320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 440 - 516
Target Start/End: Original strand, 40187626 - 40187702
Alignment:
Q  440 gtggtgttcgggattcgaaccttaaaccttatatttattatgcattatccctgccaactaagttaatctcacgagga 516  Q
    |||||||||||| || |||||  | |||||| || ||||||||||| ||||| |||||| |||||| |||| |||||    
T  40187626 gtggtgttcggggtttgaaccgcagaccttacatatattatgcattgtccctaccaactgagttaagctcatgagga 40187702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 239 - 312
Target Start/End: Complemental strand, 30326734 - 30326661
Alignment:
Q  239 tctttaatgtttcaataggttgaatacacaaaatccaagataaaatttgcattttaaacttcttatcaagtgcc 312  Q
    ||||| ||||||||||  ||||||||||||||  |||||||||||||| |||||||||||||||||||| ||||    
T  30326734 tctttgatgtttcaatgtgttgaatacacaaatcccaagataaaatttccattttaaacttcttatcaaatgcc 30326661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 241 - 340
Target Start/End: Complemental strand, 2248770 - 2248671
Alignment:
Q  241 tttaatgtttcaataggttgaatacacaaaatcc-aagataaaatttgcattttaaacttcttatcaagtgccattgaggaaaagggcacttgttagcat 339  Q
    ||||||||||||||  ||||||||||||||  || |||||||||||| || ||| ||||||||| |||||||| || |||  ||||||||||||||||||    
T  2248770 tttaatgtttcaatgtgttgaatacacaaacaccgaagataaaatttccactttgaacttcttagcaagtgccctt-agggcaagggcacttgttagcat 2248672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 309
Target Start/End: Complemental strand, 343006 - 342938
Alignment:
Q  241 tttaatgtttcaataggttgaatacacaaaatccaagataaaatttgcattttaaacttcttatcaagt 309  Q
    ||||||||||||||  |||||||||| ||| ||||| | ||||||| |||||||||||| |||||||||    
T  343006 tttaatgtttcaatgtgttgaatacataaattccaaaacaaaattttcattttaaactttttatcaagt 342938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 473 - 516
Target Start/End: Original strand, 7979746 - 7979789
Alignment:
Q  473 tttattatgcattatccctgccaactaagttaatctcacgagga 516  Q
    |||||||||||||||||||||||||| ||| || ||||||||||    
T  7979746 tttattatgcattatccctgccaactgagtcaaactcacgagga 7979789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 312
Target Start/End: Original strand, 24396825 - 24396896
Alignment:
Q  241 tttaatgtttcaataggttgaatacacaaaatccaagataaaatttgcattttaaacttcttatcaagtgcc 312  Q
    ||||||||||||||   |||||||||| || || ||||||||||||  ||||| ||||| ||||||||||||    
T  24396825 tttaatgtttcaatgttttgaatacacgaattctaagataaaatttctattttcaactttttatcaagtgcc 24396896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 516
Target Start/End: Original strand, 16890449 - 16890514
Alignment:
Q  451 gattcgaaccttaaaccttatatttattatgcattatccctgccaactaagttaatctcacgagga 516  Q
    |||| |||||||| |||||| || | ||||||||| ||| | ||||||||||||| ||||||||||    
T  16890449 gatttgaaccttagaccttacatattttatgcattgtccataccaactaagttaagctcacgagga 16890514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 241 - 309
Target Start/End: Original strand, 31597575 - 31597643
Alignment:
Q  241 tttaatgtttcaataggttgaatacacaaaatccaagataaaatttgcattttaaacttcttatcaagt 309  Q
    |||||||||| |||  ||||||| |||||| | ||||| ||||||| |||||||||  |||||||||||    
T  31597575 tttaatgttttaatgtgttgaatgcacaaatttcaagacaaaatttccattttaaaactcttatcaagt 31597643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 440 - 488
Target Start/End: Complemental strand, 35110125 - 35110077
Alignment:
Q  440 gtggtgttcgggattcgaaccttaaaccttatatttattatgcattatc 488  Q
    |||||||| ||| ||||||||| |||||||| || ||||||||||||||    
T  35110125 gtggtgtttggggttcgaacctcaaaccttacatatattatgcattatc 35110077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 31963044 - 31963113
Alignment:
Q  241 tttaatgtttcaataggttgaatacacaaaatccaagataaaatttgcattttaaacttcttatcaagtg 310  Q
    ||||||||||||||  |||||||||||||| ||||| | ||||||| |||||||||||||||||||||||    
T  31963044 tttaatgtttcaatgtgttgaatacacaaattccaaaacaaaatttccattttaaacttcttatcaagtg 31963113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 241 - 312
Target Start/End: Complemental strand, 44698089 - 44698018
Alignment:
Q  241 tttaatgtttcaataggttgaatacacaaaatccaagataaaatttgcattttaaacttcttatcaagtgcc 312  Q
    ||||||||||||||| |||||||||||||  |||||||||||| || || ||||||||| ||||||||||||    
T  44698089 tttaatgtttcaatatgttgaatacacaacttccaagataaaacttccactttaaacttattatcaagtgcc 44698018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 440 - 514
Target Start/End: Complemental strand, 44068927 - 44068853
Alignment:
Q  440 gtggtgttcgggattcgaaccttaaaccttatatttattatgcattatccctgccaactaagttaatctcacgag 514  Q
    ||||||| |||||||||||||| |||| ||| || |||||||||||||| || ||||||||||||| ||||||||    
T  44068927 gtggtgtccgggattcgaacctcaaacattaaatgtattatgcattatctctaccaactaagttaagctcacgag 44068853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 305
Target Start/End: Original strand, 27262796 - 27262860
Alignment:
Q  241 tttaatgtttcaataggttgaatacacaaaatccaagataaaatttgcattttaaacttcttatc 305  Q
    |||||||||| |||  |||||||||||||| || |||| ||||||| ||||||||||||||||||    
T  27262796 tttaatgttttaatgtgttgaatacacaaattctaagacaaaatttccattttaaacttcttatc 27262860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 307
Target Start/End: Original strand, 42592735 - 42592801
Alignment:
Q  241 tttaatgtttcaataggttgaatacacaaaatccaagataaaatttgcattttaaacttcttatcaa 307  Q
    ||||| |||||||| ||||||||||||||  |||||||||||  || || |||||||||||||||||    
T  42592735 tttaacgtttcaatgggttgaatacacaacttccaagataaaccttccactttaaacttcttatcaa 42592801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 512
Target Start/End: Original strand, 45885317 - 45885357
Alignment:
Q  472 atttattatgcattatccctgccaactaagttaatctcacg 512  Q
    |||||||||||||||||| ||||||||||||||| ||||||    
T  45885317 atttattatgcattatccttgccaactaagttaaactcacg 45885357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 312
Target Start/End: Original strand, 26761237 - 26761292
Alignment:
Q  257 gttgaatacacaaaatccaagataaaatttgcattttaaacttcttatcaagtgcc 312  Q
    |||||||||||||| |  |||||||||||| |||||||||| ||||||||| ||||    
T  26761237 gttgaatacacaaattttaagataaaattttcattttaaacctcttatcaaatgcc 26761292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 516
Target Start/End: Original strand, 48131243 - 48131294
Alignment:
Q  465 accttatatttattatgcattatccctgccaactaagttaatctcacgagga 516  Q
    |||||| || |||||||||||||| ||||||||| |||||| ||||||||||    
T  48131243 accttacatatattatgcattatctctgccaactgagttaaactcacgagga 48131294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 512
Target Start/End: Original strand, 19396183 - 19396253
Alignment:
Q  442 ggtgttcgggattcgaaccttaaaccttatatttattatgcattatccctgccaactaagttaatctcacg 512  Q
    ||||| |||||||| ||| | |||||||  || ||||||||||||||||| |||||| |||||| ||||||    
T  19396183 ggtgtccgggattcaaacatcaaaccttgcatatattatgcattatccctaccaactgagttaaactcacg 19396253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 489
Target Start/End: Original strand, 34599916 - 34599958
Alignment:
Q  447 tcgggattcgaaccttaaaccttatatttattatgcattatcc 489  Q
    ||||||||||||||  ||||||||||| |||||||||||||||    
T  34599916 tcgggattcgaaccccaaaccttatatatattatgcattatcc 34599958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 44529315 - 44529249
Alignment:
Q  241 tttaatgtttcaataggttgaatacacaaaatccaagataaaatttgcattttaaacttcttatcaa 307  Q
    |||||||||| |||| |||||||||||||  |  ||||||||| || || |||||||||||||||||    
T  44529315 tttaatgttttaatatgttgaatacacaacttttaagataaaacttccactttaaacttcttatcaa 44529249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 12807036 - 12807087
Alignment:
Q  258 ttgaatacacaaaatccaagataaaatttgcattttaaacttcttatcaagtg 310  Q
    ||||||| | ||| ||||||||||| ||| |||||||||||||||||||||||    
T  12807036 ttgaatataaaaattccaagataaatttt-cattttaaacttcttatcaagtg 12807087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 464 - 516
Target Start/End: Original strand, 30678827 - 30678879
Alignment:
Q  464 aaccttatatttattatgcattatccctgccaactaagttaatctcacgagga 516  Q
    ||||||| || ||||||||||| ||||| |||||| |||||| ||||||||||    
T  30678827 aaccttacatatattatgcattgtccctaccaactgagttaagctcacgagga 30678879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 505
Target Start/End: Complemental strand, 31962517 - 31962453
Alignment:
Q  441 tggtgttcgggattcgaaccttaaaccttatatttattatgcattatccctgccaactaagttaa 505  Q
    ||||| |||||||||||||| || || ||| || ||||||||||| ||| | |||||||||||||    
T  31962517 tggtggtcgggattcgaaccctagactttacatatattatgcattgtccttaccaactaagttaa 31962453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 440 - 516
Target Start/End: Original strand, 33153870 - 33153946
Alignment:
Q  440 gtggtgttcgggattcgaaccttaaaccttatatttattatgcattatccctgccaactaagttaatctcacgagga 516  Q
    |||||||||||| || ||||||   |||||| || ||||||||||| ||||| |||||| |||||| ||||| ||||    
T  33153870 gtggtgttcggggtttgaacctcggaccttacatatattatgcattgtccctaccaactgagttaagctcacaagga 33153946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 42479502 - 42479466
Alignment:
Q  273 ccaagataaaatttgcattttaaacttcttatcaagt 309  Q
    |||||||||||||| |||||||| |||||||||||||    
T  42479502 ccaagataaaattttcattttaaccttcttatcaagt 42479466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 241 - 312
Target Start/End: Complemental strand, 32615894 - 32615823
Alignment:
Q  241 tttaatgtttcaataggttgaatacacaaaatccaagataaaatttgcattttaaacttcttatcaagtgcc 312  Q
    ||||||||||||||  ||||||||||| || |||||||||||||||  | ||||||||||||||||||||||    
T  32615894 tttaatgtttcaatgtgttgaatacacgaattccaagataaaatttctactttaaacttcttatcaagtgcc 32615823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 29912203 - 29912126
Alignment:
Q  235 ttgctctttaatgtttcaataggttgaatacacaaaatccaagataaaatttgcattttaaacttcttatcaagtgcc 312  Q
    ||||| ||| ||||||||||  |||||||||||||| |  ||||||||||||  | ||||||||||||||||||||||    
T  29912203 ttgctttttgatgtttcaatgagttgaatacacaaattttaagataaaatttctactttaaacttcttatcaagtgcc 29912126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 241 - 312
Target Start/End: Complemental strand, 38813780 - 38813709
Alignment:
Q  241 tttaatgtttcaataggttgaatacacaaaatccaagataaaatttgcattttaaacttcttatcaagtgcc 312  Q
    ||||||||||||||| |||||||||||||   |||||||||| ||| |||||| ||||||||| ||| ||||    
T  38813780 tttaatgtttcaatatgttgaatacacaattcccaagataaatttttcattttgaacttcttaacaaatgcc 38813709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 312
Target Start/End: Complemental strand, 42964839 - 42964773
Alignment:
Q  245 atgtttcaataggttgaatacacaaaatccaagataaaatttgcattttaaacttcttatcaagtgcc 312  Q
    ||||||||||  |||||||||||||   |||||||||||||| || ||||||||||||||||||||||    
T  42964839 atgtttcaatgtgttgaatacacaatc-ccaagataaaatttccactttaaacttcttatcaagtgcc 42964773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 442 - 498
Target Start/End: Complemental strand, 13958880 - 13958824
Alignment:
Q  442 ggtgttcgggattcgaaccttaaaccttatatttattatgcattatccctgccaact 498  Q
    |||||||||||||||||||  |||||||| || |||||||||||||  |||||||||    
T  13958880 ggtgttcgggattcgaaccccaaaccttacatatattatgcattatatctgccaact 13958824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 312
Target Start/End: Original strand, 13521759 - 13521830
Alignment:
Q  241 tttaatgtttcaataggttgaatacacaaaatccaagataaaatttgcattttaaacttcttatcaagtgcc 312  Q
    ||||||||||||||  || ||||||||||| | ||| |||||||||  | |||||||||||||||| |||||    
T  13521759 tttaatgtttcaatgtgtagaatacacaaatttcaaaataaaatttctactttaaacttcttatcaggtgcc 13521830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 312
Target Start/End: Original strand, 13611294 - 13611365
Alignment:
Q  241 tttaatgtttcaataggttgaatacacaaaatccaagataaaatttgcattttaaacttcttatcaagtgcc 312  Q
    ||||||||||||||  || ||||||||||| | ||| |||||||||  | |||||||||||||||| |||||    
T  13611294 tttaatgtttcaatgtgtagaatacacaaatttcaaaataaaatttctactttaaacttcttatcaggtgcc 13611365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 308
Target Start/End: Original strand, 26738526 - 26738593
Alignment:
Q  241 tttaatgtttcaataggttgaatacacaaaatccaagataaaatttgcattttaaacttcttatcaag 308  Q
    ||||||||||||||| |||||||||||| | | || ||||||||||  | ||||||||||||| ||||    
T  26738526 tttaatgtttcaatatgttgaatacacatatttcaggataaaatttctactttaaacttcttagcaag 26738593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 302
Target Start/End: Original strand, 41909447 - 41909508
Alignment:
Q  241 tttaatgtttcaataggttgaatacacaaaatccaagataaaatttgcattttaaacttctt 302  Q
    |||||| |||||||| |||||||||||| | | ||||||||| ||| || ||||||||||||    
T  41909447 tttaatatttcaatatgttgaatacacagatttcaagataaatttttcactttaaacttctt 41909508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 440 - 492
Target Start/End: Original strand, 7839108 - 7839160
Alignment:
Q  440 gtggtgttcgggattcgaaccttaaaccttatatttattatgcattatccctg 492  Q
    |||||||||||||||||||||  | |||||  || ||||||||||||||||||    
T  7839108 gtggtgttcgggattcgaaccccataccttgcatatattatgcattatccctg 7839160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 31732121 - 31732198
Alignment:
Q  235 ttgctctttaatgtttcaataggttgaatacacaaaatccaagataaaatttgcattttaaacttcttatcaagtgcc 312  Q
    ||||| ||| ||||||||||| ||||||||||||||  ||||||||||| || |||||||  ||||||||| ||||||    
T  31732121 ttgctttttgatgtttcaatatgttgaatacacaaatcccaagataaaacttccattttaggcttcttatctagtgcc 31732198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 500
Target Start/End: Complemental strand, 41113245 - 41113187
Alignment:
Q  442 ggtgttcgggattcgaaccttaaaccttatatttattatgcattatccctgccaactaa 500  Q
    ||||||||| |||||||||  ||||||||||| ||||||| |||||| || ||||||||    
T  41113245 ggtgttcggtattcgaaccccaaaccttatatatattatgtattatctctaccaactaa 41113187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 448 - 516
Target Start/End: Complemental strand, 48376898 - 48376830
Alignment:
Q  448 cgggattcgaaccttaaaccttatatttattatgcattatccctgccaactaagttaatctcacgagga 516  Q
    |||||||||||||  |||||||| || ||||||||||||||  | |||||| || ||| ||||||||||    
T  48376898 cgggattcgaaccccaaaccttacatatattatgcattatctttaccaactgagctaagctcacgagga 48376830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 11123517 - 11123453
Alignment:
Q  245 atgtttcaataggttgaatacacaaaatccaagataaaatttgcattttaaacttcttatcaagt 309  Q
    |||||| |||| |||||||||||||| || | |||||||||| || |||||||||||||||||||    
T  11123517 atgttttaatatgttgaatacacaaattctatgataaaattttcactttaaacttcttatcaagt 11123453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 309
Target Start/End: Complemental strand, 37626999 - 37626931
Alignment:
Q  241 tttaatgtttcaataggttgaatacacaaaatccaagataaaatttgcattttaaacttcttatcaagt 309  Q
    |||||||||| |||  |||||||||||||||||||||| |||  || | ||||||||||||||||||||    
T  37626999 tttaatgtttaaatgtgttgaatacacaaaatccaagacaaagcttcccttttaaacttcttatcaagt 37626931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 235 - 310
Target Start/End: Original strand, 26009726 - 26009801
Alignment:
Q  235 ttgctctttaatgtttcaataggttgaatacacaaaatccaagataaaatttgcattttaaacttcttatcaagtg 310  Q
    ||||| |||||| ||||||||  ||||||||||||| ||||||||||| |||  | |||||| |||||||||||||    
T  26009726 ttgctttttaatatttcaatattttgaatacacaaattccaagataaagtttttactttaaatttcttatcaagtg 26009801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 312
Target Start/End: Original strand, 23568062 - 23568116
Alignment:
Q  258 ttgaatacacaaaatccaagataaaatttgcattttaaacttcttatcaagtgcc 312  Q
    ||||||| ||||| | ||||||||| ||| ||||| |||||||||||||||||||    
T  23568062 ttgaatatacaaatttcaagataaagtttccatttaaaacttcttatcaagtgcc 23568116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 307
Target Start/End: Complemental strand, 42098975 - 42098913
Alignment:
Q  245 atgtttcaataggttgaatacacaaaatccaagataaaatttgcattttaaacttcttatcaa 307  Q
    |||||||||||  ||||||| |||||  | || ||||||||| ||||||||||||||||||||    
T  42098975 atgtttcaatatattgaatatacaaatcctaaaataaaattttcattttaaacttcttatcaa 42098913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 516
Target Start/End: Original strand, 20096295 - 20096336
Alignment:
Q  475 tattatgcattatccctgccaactaagttaatctcacgagga 516  Q
    ||||||||||||||||| |||||| |||||| ||||||||||    
T  20096295 tattatgcattatccctaccaactgagttaaactcacgagga 20096336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 516
Target Start/End: Original strand, 41897578 - 41897619
Alignment:
Q  475 tattatgcattatccctgccaactaagttaatctcacgagga 516  Q
    ||||||||| ||||||| ||||||||||||||||||| ||||    
T  41897578 tattatgcaatatccctaccaactaagttaatctcacaagga 41897619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 311
Target Start/End: Original strand, 11074549 - 11074625
Alignment:
Q  235 ttgctctttaatgtttcaataggttgaatacacaaaatccaagataaaatttgcattttaaacttcttatcaagtgc 311  Q
    ||||| ||| ||||||||||  ||||||||||||||  |||||| |||||||  | |||||||||||||||||||||    
T  11074549 ttgcttttttatgtttcaatgtgttgaatacacaaatcccaagaaaaaatttctactttaaacttcttatcaagtgc 11074625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 463 - 517
Target Start/End: Original strand, 41939121 - 41939175
Alignment:
Q  463 aaaccttatatttattatgcattatccctgccaactaagttaatctcacgaggat 517  Q
    |||||||| || ||||||||||||||||| ||||||||| ||| |||||||||||    
T  41939121 aaaccttacatatattatgcattatccctaccaactaagctaagctcacgaggat 41939175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 246 - 343
Target Start/End: Original strand, 40142006 - 40142103
Alignment:
Q  246 tgtttcaataggttgaatacacaaaatccaagataaaatttgcattttaaacttcttatcaagtgccattgaggaaaagggcacttgttagcatttct 343  Q
    |||||||||  |||||||| ||||| |  |||||||| |||  | ||||||||||||||||| |||  ||  || |||||||||||||||||||||||    
T  40142006 tgtttcaatgagttgaatatacaaattttaagataaattttttactttaaacttcttatcaactgctcttagggcaaagggcacttgttagcatttct 40142103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 440 - 505
Target Start/End: Complemental strand, 40797435 - 40797370
Alignment:
Q  440 gtggtgttcgggattcgaaccttaaaccttatatttattatgcattatccctgccaactaagttaa 505  Q
    ||||||||||| |||||||||||| ||||| ||| ||||||||||| ||| | |||| ||||||||    
T  40797435 gtggtgttcggaattcgaaccttagaccttgtatatattatgcattgtccttaccaattaagttaa 40797370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 8741046 - 8741098
Alignment:
Q  258 ttgaatacacaaaatccaagataaaatttgcattttaaacttcttatcaagtg 310  Q
    ||||||||||||| |||||||||||||||  ||||||||||| |||| |||||    
T  8741046 ttgaatacacaaattccaagataaaatttctattttaaacttgttataaagtg 8741098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 514
Target Start/End: Original strand, 34364508 - 34364559
Alignment:
Q  463 aaaccttatatttattatgcattatccctgccaactaagttaatctcacgag 514  Q
    ||||||| ||| ||||||||||||| ||| ||||||||||||| ||||||||    
T  34364508 aaaccttgtatatattatgcattattcctaccaactaagttaaactcacgag 34364559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 443 - 517
Target Start/End: Complemental strand, 20239411 - 20239337
Alignment:
Q  443 gtgttcgggattcgaaccttaaaccttatatttattatgcattatccctgccaactaagttaatctcacgaggat 517  Q
    |||| |||||||||||||||| |||||  || |||||||||||||||||  ||| | |||||| |||||| ||||    
T  20239411 gtgtccgggattcgaaccttagaccttgcatatattatgcattatccctatcaattgagttaagctcacgcggat 20239337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 310
Target Start/End: Complemental strand, 1944798 - 1944731
Alignment:
Q  241 tttaatgtttcaataggttgaatacacaaaatccaagataaaatttgcattttaaacttcttatcaagtg 310  Q
    ||||||||||||||   ||||||||||||| |||||||  |||||| |||||||||||| ||||||||||    
T  1944798 tttaatgtttcaatgtattgaatacacaaattccaaga-caaattttcattttaaactt-ttatcaagtg 1944731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 307
Target Start/End: Original strand, 37426568 - 37426640
Alignment:
Q  235 ttgctctttaatgtttcaataggttgaatacacaaaatccaagataaaatttgcattttaaacttcttatcaa 307  Q
    ||||| ||| || |||||||  ||||||||||||||  ||||  ||||||||  |||||||||||||||||||    
T  37426568 ttgctttttgatatttcaatgtgttgaatacacaaatcccaaagtaaaatttctattttaaacttcttatcaa 37426640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 241 - 312
Target Start/End: Original strand, 844800 - 844871
Alignment:
Q  241 tttaatgtttcaataggttgaatacacaaaatccaagataaaatttgcattttaaacttcttatcaagtgcc 312  Q
    ||||||||||||||  |||||||||||||  ||||| ||| ||||  || ||||||||||||||||||||||    
T  844800 tttaatgtttcaatgtgttgaatacacaacttccaaaatagaattaccactttaaacttcttatcaagtgcc 844871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 241 - 312
Target Start/End: Complemental strand, 19608834 - 19608763
Alignment:
Q  241 tttaatgtttcaataggttgaatacacaaaatccaagataaaatttgcattttaaacttcttatcaagtgcc 312  Q
    ||||||||||||||  |||||||| ||||| ||||||||||| ||| | |||| |||||||||| |||||||    
T  19608834 tttaatgtttcaatgtgttgaatagacaaattccaagataaagtttcctttttgaacttcttattaagtgcc 19608763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 516
Target Start/End: Complemental strand, 1512922 - 1512850
Alignment:
Q  444 tgttcgggattcgaaccttaaaccttatatttattatgcattatccctgccaactaagttaatctcacgagga 516  Q
    |||||||  ||||||||||| |||||| || ||||||||||| ||||| | |||| |||||| ||||||||||    
T  1512922 tgttcggagttcgaaccttagaccttacatatattatgcattgtccctactaactgagttaagctcacgagga 1512850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 516
Target Start/End: Complemental strand, 3156605 - 3156529
Alignment:
Q  440 gtggtgttcgggattcgaaccttaaaccttatatttattatgcattatccctgccaactaagttaatctcacgagga 516  Q
    |||||| ||||||||||||||  ||| |||| || | ||||||||||||| | |||||| |||||| ||||||||||    
T  3156605 gtggtggtcgggattcgaaccccaaatcttacatattttatgcattatccataccaactgagttaaactcacgagga 3156529  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 516
Target Start/End: Complemental strand, 10199090 - 10199014
Alignment:
Q  440 gtggtgttcgggattcgaaccttaaaccttatatttattatgcattatccctgccaactaagttaatctcacgagga 516  Q
    |||||| ||||||||||||||  | ||||||||| ||||||||||| ||| | |||||| || ||| ||||||||||    
T  10199090 gtggtggtcgggattcgaaccccacaccttatatatattatgcattgtccataccaactgagctaagctcacgagga 10199014  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 442 - 517
Target Start/End: Complemental strand, 11017245 - 11017170
Alignment:
Q  442 ggtgttcgggattcgaaccttaaaccttatatttattatgcattatccctgccaactaagttaatctcacgaggat 517  Q
    ||||| |||||||||||||| | |||||  || ||||||||||||||||| |||||| || ||| |||||| ||||    
T  11017245 ggtgtccgggattcgaacctcagaccttgcatatattatgcattatccctaccaactgagctaaactcacgcggat 11017170  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 512
Target Start/End: Original strand, 2642788 - 2642825
Alignment:
Q  475 tattatgcattatccctgccaactaagttaatctcacg 512  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  2642788 tattatgcattatccctaccaactaagttaaactcacg 2642825  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 516
Target Start/End: Original strand, 20370143 - 20370196
Alignment:
Q  463 aaaccttatatttattatgcattatccctgccaactaagttaatctcacgagga 516  Q
    ||||||| ||| ||||||||||||||||| |||||| || ||| ||||||||||    
T  20370143 aaaccttgtatatattatgcattatccctaccaactgagctaagctcacgagga 20370196  T

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Target: scaffold0161 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 440 - 505
Target Start/End: Complemental strand, 26769 - 26704
Alignment:
Q  440 gtggtgttcgggattcgaaccttaaaccttatatttattatgcattatccctgccaactaagttaa 505  Q
    ||||||| || |||| |||| ||||||||||||| |||||||||||||||||  ||||| ||||||    
T  26769 gtggtgtccgagatttgaactttaaaccttatatatattatgcattatccctaacaactgagttaa 26704  T

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Target: scaffold0074 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 312
Target Start/End: Original strand, 29748 - 29816
Alignment:
Q  244 aatgtttcaataggttgaatacacaaaatccaagataaaatttgcattttaaacttcttatcaagtgcc 312  Q
    |||||||||||  ||||||||||| || |||||||||||||||  | ||| ||||| ||||||||||||    
T  29748 aatgtttcaatgtgttgaatacacgaattccaagataaaatttctactttcaactttttatcaagtgcc 29816  T

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Target: scaffold0445 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 517
Target Start/End: Complemental strand, 4541 - 4464
Alignment:
Q  440 gtggtgttcgggattcgaaccttaaaccttatatttattatgcattatccctgccaactaagttaatctcacgaggat 517  Q
    ||||||| ||||||||||||  || |||||| || ||||||||||||| |||  ||||| |||||| |||||| ||||    
T  4541 gtggtgtccgggattcgaactctagaccttacatatattatgcattattcctatcaacttagttaagctcacgtggat 4464  T

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