View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_81 (Length: 367)
Name: NF8260A_low_81
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_81 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 7 - 348
Target Start/End: Original strand, 34920720 - 34921059
Alignment:
| Q |
7 |
cataggccaattttcattatattt-acaaattcatctagttaaggattaatattaaatgagatatgattaaacaatgtattataagtggaaacaatcttc |
105 |
Q |
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| T |
34920720 |
cataggccaattttctttatattttacaaattcatctagttaaggattaatattaaatgagatatgattaaacaatgtattataagtggaaacaatcttc |
34920819 |
T |
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| Q |
106 |
acttgacaagttacctttgtaaagttgatttaggctcgacctaaattctaatatggtatattagacctgattatagttcatgatcacgtgggtaatcgac |
205 |
Q |
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|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34920820 |
acttgataagttaactttgtaaagttgatttaggctcgacctaaattctaatatggtatatcagacctgattatagttcatgatcacgtgggtaatcgac |
34920919 |
T |
|
| Q |
206 |
tcatcacatttctgttacgtctcatgctattcaattaatgctattggaccaccattcaaataacccttattggtaccatgtggtatcgtgtcctaggtgt |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
34920920 |
tcatcacatttctgttacgtctcatgctattcaattaatgctattag---gccattcaaataactcttattggtaccatgtggtatcgtctcctaggtgt |
34921016 |
T |
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| Q |
306 |
ggtttgttttaggggttacacattgaatgatatatgacctaat |
348 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34921017 |
ggtttgttttaggggttacacattgaatgacatatgacctaat |
34921059 |
T |
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