View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8260A_low_9 (Length: 521)
Name: NF8260A_low_9
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 20 - 515
Target Start/End: Complemental strand, 38323091 - 38322596
Alignment:
| Q |
20 |
aacatagtctaccatttctgatgaagatattaatgccaatttttcctccttgtttcgaaaactagaatttaaagtagaaagtagcttaggaaaatctacc |
119 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38323091 |
aacatagtctatcatttctgatgaagatattaatgccaatttttcctccttgtttcgaaaactagaatttaaagtagaaagtagcttaggaaaatctacc |
38322992 |
T |
|
| Q |
120 |
tctactactttctctactttactttggataggatatctcatgatatattgaggatattgctgaacaattgacacaattgtagaagaattatcgatgcttg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38322991 |
tctactactttctctactttactttggataggatatctcatgatatattgaggatattgctgaacaattgacacaattgtagaagaatcatcgatgcttg |
38322892 |
T |
|
| Q |
220 |
atttggaaagattatcacaagattcacatggtttagaaactctttctatcacttcaatctctgaaggatggactttagattctgaaattgaggcatttat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38322891 |
atttggaaagattatcacaagattcacatggtttagaaactctttctatcacttcaatctctgaaggatggactttagattctgaaattgaggcatttat |
38322792 |
T |
|
| Q |
320 |
ttgagcatcactttcgacaagtcgatatcctttgttttctttcagctgcacaaatacattcaacattatttgctactattaattaataagatcataagtt |
419 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38322791 |
ttgagcattactttcgacaagtcgatatcctttgttttctttcagctgcacaaatacattcaacattatttgctactattaattaataagatcataagtt |
38322692 |
T |
|
| Q |
420 |
cataaatatgattacattgaccatttagtatagaaaaatgaacctgcactttttgccaatcagggttgtactttatggctaacacattttcttgga |
515 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38322691 |
cataaatatgattacattgaccatatagtatagaaaaatgaacctgcactttttgccaatcagggttgtactttatggctaacacattttgttgga |
38322596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University