View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_96 (Length: 350)
Name: NF8260A_low_96
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_96 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 15 - 333
Target Start/End: Complemental strand, 35993299 - 35992979
Alignment:
| Q |
15 |
atgaagggaaagccattagtaacaaagtagaaagaaactaaatgaagttaattatatctggatgccacaagtaagggacgcg--tgtcacggaccggaaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35993299 |
atgaagggaaagccattagtaacaaagtagaaagaaactaaatgaagttaattatatctggatgccacaagtaagggacgcgcgtgtcacggaccggaaa |
35993200 |
T |
|
| Q |
113 |
tggaaaacaaaaagaaagtaattaatatgatgtgttagtcttaatcaaaagctgtcaaaaatggcagggcaaatctcctttggcaaaccagaagcatgca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35993199 |
tggaaaacaaaaagaaagtaattaatatgatgtgttagtcttaatcaaaagctgtcaaaaatggcagggcaaatctcctttggcaaaccagaagcatgca |
35993100 |
T |
|
| Q |
213 |
tgtccaagctttctacttcgttctgctaatagagatttgctctatcattccttaacagcagcacaaatatatcacacttgaagctctatatctgtttgaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
35993099 |
tgtccaagctttctacttcgttctgctaatagagatttgctctatcattccttaacagcagcacgaatatatcacacttgaagctctatatctgtttgaa |
35993000 |
T |
|
| Q |
313 |
taaaatgcatgtcttatatat |
333 |
Q |
| |
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|||||||||||||||||||| |
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| T |
35992999 |
caaaatgcatgtcttatatat |
35992979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 15 - 333
Target Start/End: Complemental strand, 35998069 - 35997745
Alignment:
| Q |
15 |
atgaagggaaagccattagtaacaaa------gtagaaagaaactaaatgaagttaattatatctggatgccacaagtaagggacgcgtgtcacggaccg |
108 |
Q |
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||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||| | || ||||||||| |||| ||||||| |||||| |
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| T |
35998069 |
atgaaaggaaagccattagtaacaaaaagaaagtagaaagaaactaaatgaagataattatatcagcataccacaagtatgggagacgtgtcatggaccg |
35997970 |
T |
|
| Q |
109 |
gaaatggaaaacaaaaagaaagtaattaatatgatgtgttagtcttaatcaaaagctgtcaaaaatggcagggcaaatctcctttggcaaaccagaagca |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35997969 |
actatggaaaacaaaaagaaagtaattaatatgatgtgttagtcttaatcaaaagctgtcaaaaatggcagggcaaatctcctttggcaaaccagaagca |
35997870 |
T |
|
| Q |
209 |
tgcatgtccaagctttctacttcgttctgctaatagagatttgctctatcattccttaacagcagcacaaatatatcacacttgaagctctatatctgtt |
308 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||| || |
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| T |
35997869 |
tgcatgtccaagctttctacttcgttctgccaatagagatttgctctatcattcctcaacagcagcacaaatatatgacacttccagctctatatctctt |
35997770 |
T |
|
| Q |
309 |
tgaataaaatgcatgtcttatatat |
333 |
Q |
| |
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|||| |||||||||||||||||||| |
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| T |
35997769 |
tgaacaaaatgcatgtcttatatat |
35997745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 153 - 333
Target Start/End: Complemental strand, 35988441 - 35988259
Alignment:
| Q |
153 |
ttaatcaaaagctgtcaaaaatggcagggcaaatctcctttggcaaaccagaagcatgcatgtccaagcttt----ctacttcgttctgctaatagagat |
248 |
Q |
| |
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||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||| |||||| | ||||| | ||||| || |||||| |
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| T |
35988441 |
ttaattaaaagctgtcaaaaatggcagggcaaatcttctttggcaaactagaagcaagcatgttcaagctctctagctactcctctctgccaaaagagat |
35988342 |
T |
|
| Q |
249 |
ttgctctatcattccttaacagcagcacaaatatatcacacttgaagctctatatctgtttgaataaaatgcatgtcttatatat |
333 |
Q |
| |
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|| | ||||||||||| ||||||||||||| ||||||||||| ||||||| |||||||||| |||||| |||||||||||| |
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| T |
35988341 |
ttcccctatcattcctcaacagcagcacaa--atatcacactttcagctctaattctgtttgaacaaaatgtgtgtcttatatat |
35988259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 112 - 281
Target Start/End: Complemental strand, 35982555 - 35982386
Alignment:
| Q |
112 |
atggaaaacaaaaagaaagtaattaatatgatgtgttagtcttaatcaaaagctgtcaaaaatggcagggcaaatctcctttggcaaaccagaagcatgc |
211 |
Q |
| |
|
||||||||||||||| ||||| ||| |||| ||||| | |||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
35982555 |
atggaaaacaaaaagtgagtaaataacatgaattgttattgttaaccaatagctgtcaaaaatggcagggcaaatctcctttggcaaaccagaaacattc |
35982456 |
T |
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| Q |
212 |
atgtccaagctttctacttcgttctgctaatagagatttgctctatcattccttaacagcagcacaaata |
281 |
Q |
| |
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||| ||| ||| |||| | ||||| || |||||||| | ||||||||||| |||||||| ||||||| |
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| T |
35982455 |
ctgtttaagatttttactcctctctgccaaaagagattttccctatcattcctcaacagcagaacaaata |
35982386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 229
Target Start/End: Complemental strand, 14686247 - 14686140
Alignment:
| Q |
122 |
aaaagaaagtaattaatatgatgtgttagtcttaatcaaaagctgtcaaaaatggcagggcaaatctcctttggcaaaccagaagcatgcatgtccaagc |
221 |
Q |
| |
|
|||| |||||||| |||| |||||||||| || |||||||||||| ||||||| ||||| ||||||||||| |||||| ||||| ||||||| ||||| |
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| T |
14686247 |
aaaacaaagtaatcaatagaatgtgttagtgttgatcaaaagctgtaaaaaatgacagggtaaatctccttttgcaaacttgaagcttgcatgttcaagc |
14686148 |
T |
|
| Q |
222 |
tttctact |
229 |
Q |
| |
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| |||||| |
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| T |
14686147 |
tctctact |
14686140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 205
Target Start/End: Complemental strand, 14693949 - 14693871
Alignment:
| Q |
127 |
aaagtaattaatatgatgtgttagtcttaatcaaaagctgtcaaaaatggcagggcaaatctcctttggcaaaccagaa |
205 |
Q |
| |
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||||||||||||| ||| || ||| ||||||||||| ||| ||||||| |||||||||||| |||| |||||| |||| |
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| T |
14693949 |
aaagtaattaataggataggtcagtgttaatcaaaagatgtgaaaaatgacagggcaaatcttctttagcaaactagaa |
14693871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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