View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260_high_21 (Length: 230)
Name: NF8260_high_21
Description: NF8260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 8 - 211
Target Start/End: Complemental strand, 11677510 - 11677323
Alignment:
| Q |
8 |
gagtagcagagaacaaccatgagaactagacgttcacataggaaatgtggttgaaatagagataaacaagagacaatggaggtgcaaattgtactgtgca |
107 |
Q |
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| T |
11677510 |
gagtggcagagaacaaccatgagaactagacgttcacataggaaatgtggttgaaatagagataaacaagagacaatggaggtgcaaattgtactgtgca |
11677411 |
T |
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| Q |
108 |
aagatatttagtatgcaaactcagcagcaacatacatcagcacatacatacatcaacacatacatggttgactgattcaacaacaaactttctctaatgc |
207 |
Q |
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| T |
11677410 |
aagatatttagtgtgcaaactcagcagcaacatacatcagcacat----------------acatggttgactgattcaacaacaaactttctctaatgc |
11677327 |
T |
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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 19473380 - 19473454
Alignment:
| Q |
31 |
aactagacgttcacataggaaatgtggttgaaatagagataaacaagagacaatggaggtgcaaattgtactgtg |
105 |
Q |
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| T |
19473380 |
aactagacgttcacataggaaaggttgttgaaatagcgataaacaagagatagtggagatgcaaattgtattgtg |
19473454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 19473337 - 19473370
Alignment:
| Q |
15 |
agagaacaaccatgagaactagacgttcacatag |
48 |
Q |
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| T |
19473337 |
agagaactaccatgagaactagacgttcacatag |
19473370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 42251476 - 42251549
Alignment:
| Q |
36 |
gacgttcacataggaaatgtggttgaaatagagataaacaagagacaatggaggtgcaaattgtactgtgcaaa |
109 |
Q |
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||||||||||||| ||| ||||| ||| ||| |||||| ||||||| | ||||||||| ||||||||||||||| |
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| T |
42251476 |
gacgttcacatagaaaaagtggtagaagtagcgataaataagagacgacggaggtgcagattgtactgtgcaaa |
42251549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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