View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260_high_3 (Length: 425)
Name: NF8260_high_3
Description: NF8260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 12 - 412
Target Start/End: Complemental strand, 2842922 - 2842522
Alignment:
| Q |
12 |
atggacatcagacaatacgagaggttaattgaagaaagagtttcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaaggg |
111 |
Q |
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| T |
2842922 |
atggaaatgagacaatacgagaggttaattgaagaaagagtttcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaaggg |
2842823 |
T |
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| Q |
112 |
agaatcnnnnnnnggaaaaggaacttgaaacttataggcaaatgagtttgacagaaagttgcgagttgcattcgaagtcagcagaggtgcggcttagtga |
211 |
Q |
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| T |
2842822 |
aaaatctttttttggaaaaggaacttgaaacttttaggcaaatgagtttgacagaaagttgcgagttgcattcgaagtcagcagaggtgcggcttagtga |
2842723 |
T |
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| Q |
212 |
atggaaacgaagctcgccactttcatttgaaacatgtgatgatccatcacagatcgaaagtactgtacctattgttaagcaagattgtacgaataataca |
311 |
Q |
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| T |
2842722 |
atggaaacgaagctcgccactttcatttgaaacatgtgatgatccatcacagatcgaaagtactgtacttattgttaagcaagattgtaccaataataca |
2842623 |
T |
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| Q |
312 |
gaacatgaagagttggataaaaacactgaatacaaggatcgagcatgtgatgatttgcatagctccttttatgatactgagtctgatgttcttgatgtcc |
411 |
Q |
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| T |
2842622 |
gaacatgaagagttggataaaaacactgaatacaaggatcgagcatgtgatgatttgcatagctccttttatgatactgagtctgatgttcttgatgtcc |
2842523 |
T |
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| Q |
412 |
a |
412 |
Q |
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| T |
2842522 |
a |
2842522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 12 - 150
Target Start/End: Complemental strand, 2838821 - 2838683
Alignment:
| Q |
12 |
atggacatcagacaatacgagaggttaattgaagaaagagtttcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaaggg |
111 |
Q |
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| T |
2838821 |
atggaaatgagacaatatgagaggttaattgaagaaagagctgcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaaagg |
2838722 |
T |
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| Q |
112 |
agaatcnnnnnnnggaaaaggaacttgaaacttataggc |
150 |
Q |
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| T |
2838721 |
agaatctctttttggaaaaggaacttgaaagttataggc |
2838683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 318 - 408
Target Start/End: Complemental strand, 2838590 - 2838500
Alignment:
| Q |
318 |
gaagagttggataaaaacactgaatacaaggatcgagcatgtgatgatttgcatagctccttttatgatactgagtctgatgttcttgatg |
408 |
Q |
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| T |
2838590 |
gaagaggtggaggaaaacagtcaacacaaggatcaagcgtgcaatgatatgcatagatccttttatgatactgagtctgatgttcttgatg |
2838500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 263
Target Start/End: Complemental strand, 2838679 - 2838645
Alignment:
| Q |
229 |
cactttcatttgaaacatgtgatgatccatcacag |
263 |
Q |
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| T |
2838679 |
cactttcatttgaaacttgtgatgatccatcacag |
2838645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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