View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8260_high_4 (Length: 425)
Name: NF8260_high_4
Description: NF8260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 12 - 408
Target Start/End: Original strand, 4968753 - 4969162
Alignment:
| Q |
12 |
agcagagagatgattgagagagagaaa-gaaatatatatcattctgacggtgtaacataacatcattcatccgacgattcaaataacttgtccatcgtga |
110 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
4968753 |
agcaaagagatgattgagagagagaaaagaaatatatatcattctgatggtgtaacataacatcatttatcggacgattcaaataacttgtccatcgtga |
4968852 |
T |
|
| Q |
111 |
gagacttgcttcacttgcccaccctagcatccgcgccaagttcactttgttttgaaacataacttctttc----------aattctttgtaatttcaatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4968853 |
gagacttgcttcacttgcccaccctagcatcggcgccaagttcactttgttttgaaacataacttctttcggttcagttcaattctttgtaatttcaatt |
4968952 |
T |
|
| Q |
201 |
cctcatgtttaacatccaaatcgttgaacatttctttaaaccaaaacattttccaaaactatcaatacataccatcacacacataaggtttttcagatta |
300 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4968953 |
cctcatatttaacatccaaatcgttgaacatttctttaaaccaaaacattttccaaaactatcaatacacaccatcacacacataaggtttttcagatta |
4969052 |
T |
|
| Q |
301 |
tc--ataacttgtcttgtctaagattcaatattcgtaatgattaaataatcttttgatgttggtttggtgcacttcacaattaaccaatttttcgagatc |
398 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4969053 |
tcagataacttgtcttgtctaagattcaatattcacaatgattaaataatcttttgatgttggtttggtgcacttcacaattaaccaatttttcgagatc |
4969152 |
T |
|
| Q |
399 |
aaagaacaac |
408 |
Q |
| |
|
|||||||||| |
|
|
| T |
4969153 |
aaagaacaac |
4969162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University