View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8260_high_5 (Length: 417)
Name: NF8260_high_5
Description: NF8260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260_high_5 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 13 - 400
Target Start/End: Complemental strand, 26713658 - 26713271
Alignment:
| Q |
13 |
tggtgttggagatgattactggaaagagtccaacaacaggtatccaaatcaaagacaaagaagagttgtatcatgagagattggtaacatgggttaggga |
112 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26713658 |
tggtgttggagatgattaccggaaagagtccaacaactggtatccaaatcaaagacaaagaagagttgtatcatgagagattggtaacatgggttaggga |
26713559 |
T |
|
| Q |
113 |
gaaaagnnnnnnngtactagaagttgcttgttgggttgaagaaattgttgaccctgcattgggatcgaattatgatgcaaagagaatggaaactttggca |
212 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
26713558 |
gaaaagaaaaaaagtactagaagttggttgttgggttgaagaaattgttgaccctgcattgggatcaaattatgatgcaaagagaatggaaactttggca |
26713459 |
T |
|
| Q |
213 |
aatgttgcattggattgtgtacaagaagataaagatgttagacccaccatgagtcaagttgttgagaggctcctaagtcatcaacataactattaatggc |
312 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26713458 |
aatgttgcattggattgtgtacaggaagagaaagatgttagacccaccataagtcaagttgttgagaggctcctaagtcatcaacataactattaatggc |
26713359 |
T |
|
| Q |
313 |
aagtacaatgaataaccatctctcctgtttcacttcttgtgtttcaattattttctagatgtaatgtgatttaagaacttatgattag |
400 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26713358 |
aagtgcaatgaataaccatctctcctgtttcacttcttgtgtttcaattattttctagatgtaatgtgatttaagaacttatgattag |
26713271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 13 - 400
Target Start/End: Complemental strand, 26736894 - 26736487
Alignment:
| Q |
13 |
tggtgttggagatgattactggaaagagtccaacaacaggtatccaaatcaaagacaaagaagagttgtatcatgagagattggtaacatgggttaggga |
112 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26736894 |
tggtgttggagatgattacaggaaagagtccaacaacaggtatccaaatcaaagacaaagaagagttgtatcatgagagattggtaacatgggttaggga |
26736795 |
T |
|
| Q |
113 |
gaaaagnnnnnnngtactagaagttgcttgttgggttgaagaaattgttgaccctgcattgggatcgaattatgatgcaaagagaatggaaactttggca |
212 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26736794 |
gaaaagaagaaaagtactagaagttgcttgttgggttgaagaaattgttgaccctgcattgggatcaaattatgatgcaaagagaatggaaactttggca |
26736695 |
T |
|
| Q |
213 |
aatgttgcattggattgtgtacaagaagataaagatgttagacccaccatgagtcaagttgttgagagg--ctcctaagtcatcaacataactattaatg |
310 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||| |
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|
| T |
26736694 |
aatgttgcattggattgtgtacaggaagataaagatgttagacccaccatgagtcaagttgttgagaggctctcctaagtcattaacataactattgatg |
26736595 |
T |
|
| Q |
311 |
gcaagtacaatgaataaccatctctc------------------ctgtttcacttcttgtgtttcaattattttctagatgtaatgtgatttaagaactt |
392 |
Q |
| |
|
||| ||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26736594 |
gcattcacaatgagtaaccatctctcctgtttacaattattcaactgtttcacttcttgggtttcaattattttctagatgtaatgtgatttaagaactt |
26736495 |
T |
|
| Q |
393 |
atgattag |
400 |
Q |
| |
|
|||||||| |
|
|
| T |
26736494 |
atgattag |
26736487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 400
Target Start/End: Complemental strand, 26698506 - 26698119
Alignment:
| Q |
13 |
tggtgttggagatgattactggaaagagtccaacaacaggtatccaaatcaaagacaaagaagagttgtatcatgagagattggtaacatgggttaggga |
112 |
Q |
| |
|
||||||||||||| |||||||| ||| ||||||||||| |||| | || |||||| |||||| || | | ||||||| |||| ||||||||||||||| |
|
|
| T |
26698506 |
tggtgttggagataattactggtaagggtccaacaacaagtataccaaacaaagatggagaagacttttgtgatgagagcttggcaacatgggttaggga |
26698407 |
T |
|
| Q |
113 |
gaaaagnnnnnnngta-ctagaagttgcttgttgggttgaagaaattgttgaccctgcattgggatcgaattatgatgcaaagagaatggaaactttggc |
211 |
Q |
| |
|
||||| | | ||| || ||| |||||||||||| ||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26698406 |
aaaaagtagaaaaggatcta-aatttggttgttgggttgaggaaattgctgaccctaaattgggatcaaattatgatgcaaagagaatggaaactttggc |
26698308 |
T |
|
| Q |
212 |
aaatgttgcattggattgtgtacaagaagataaagatgttagacccaccatgagtcaagttgttgagaggctcctaagtcatcaacataactattaatgg |
311 |
Q |
| |
|
||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||| |
|
|
| T |
26698307 |
aaatgttgctttggattgtgtgtctgaagagaaagatgttagacccaccatgagtcaagttgttgagaggctcataagtcattaacatacctattaatgg |
26698208 |
T |
|
| Q |
312 |
caagtacaatgaataaccatctctcctgtttcacttcttgtgtttcaattattttctagatgtaatgtgatttaagaacttatgattag |
400 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26698207 |
catgcacaatgaataaccatctctcctgtttcacttcttgtaattcagttattttctagatgtaatgtgatttaagaatgtatgattag |
26698119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 15 - 283
Target Start/End: Complemental strand, 26743903 - 26743635
Alignment:
| Q |
15 |
gtgttggagatgattactggaaagagtccaacaacaggtatccaaatcaaagacaaagaagagttgtatcatgagagattggtaacatgggttagggaga |
114 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
26743903 |
gtgttggagatgattaccggaaagagtccaacaacaggtatccaaatcaaagacaaagaagagttgtgtcatgagaggttggtaacatgggttagggaga |
26743804 |
T |
|
| Q |
115 |
aaagnnnnnnngtactagaagttgcttgttgggttgaagaaattgttgaccctgcattgggatcgaattatgatgcaaagagaatggaaactttggcaaa |
214 |
Q |
| |
|
|||| | | ||||||||| |||||||||||| |||||||||||||| ||||||||| |||||||||| ||||| ||||| ||||||||| | |
|
|
| T |
26743803 |
aaagaagaaaaggattagaagttggttgttgggttgagcaaattgttgaccctaaattgggatcaaattatgatgtaaagaagatggagactttggcaga |
26743704 |
T |
|
| Q |
215 |
tgttgcattggattgtgtacaagaagataaagatgttagacccaccatgagtcaagttgttgagaggct |
283 |
Q |
| |
|
|||||| |||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26743703 |
tgttgctttggattgtgtaaaggaagagaaagatgttagacccaccatgagtcaagttgttgagaggct |
26743635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 15 - 283
Target Start/End: Complemental strand, 26750828 - 26750560
Alignment:
| Q |
15 |
gtgttggagatgattactggaaagagtccaacaacaggtatccaaatcaaagacaaagaagagttgtatcatgagagattggtaacatgggttagggaga |
114 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| | |
|
|
| T |
26750828 |
gtgttggagatgattaccggaaagagtccaacaacaggtatccaaatcaaagacaaagaagagttgtgtcatgagaggttggtaacatgggttagggaaa |
26750729 |
T |
|
| Q |
115 |
aaagnnnnnnngtactagaagttgcttgttgggttgaagaaattgttgaccctgcattgggatcgaattatgatgcaaagagaatggaaactttggcaaa |
214 |
Q |
| |
|
|||| | | ||||||||| ||||||||| | | ||||||| ||||| ||||||||| |||||||||| ||||| ||||| || |||||||| |
|
|
| T |
26750728 |
aaagaagaaaaggagtagaagttggttgttgggtggcacaaattgtagacccaaaattgggatcaaattatgatgtaaagaagatggagacattggcaaa |
26750629 |
T |
|
| Q |
215 |
tgttgcattggattgtgtacaagaagataaagatgttagacccaccatgagtcaagttgttgagaggct |
283 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26750628 |
tgttgctttggattgtgtacaagaagataaagatgttagacctaccatgagtcaagttgttgagaggct |
26750560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 13 - 338
Target Start/End: Complemental strand, 26733669 - 26733344
Alignment:
| Q |
13 |
tggtgttggagatgattactggaaagagtccaacaacaggtatccaaatcaaagacaaagaagagttgtatcatgagagattggtaacatgggttaggga |
112 |
Q |
| |
|
||||||||||||| |||||||| ||| ||||||||||| |||| | || |||||| |||||| || | | ||||||| || | ||||||||||||||| |
|
|
| T |
26733669 |
tggtgttggagataattactggtaagggtccaacaacaagtataccaaacaaagatggagaagacttttgtgatgagagcttagaaacatgggttaggga |
26733570 |
T |
|
| Q |
113 |
gaaaagnnnnnnngta-ctagaagttgcttgttgggttgaagaaattgttgaccctgcattgggatcgaattatgatgcaaagagaatggaaactttggc |
211 |
Q |
| |
|
||||| | | ||| || ||| |||||||||||| ||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26733569 |
aaaaagaagaaaaggatcta-aatttggttgttgggttgaggaaattgctgaccctaaattgggatcaaattatgatgcaaagagaatggaaactttggc |
26733471 |
T |
|
| Q |
212 |
aaatgttgcattggattgtgtacaagaagataaagatgttagacccaccatgagtcaagttgttgagaggctcctaagtcatcaacataactattaatgg |
311 |
Q |
| |
|
||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26733470 |
aaatgttgctttggattgtgtggctgaagagaaagatgttagacccaccatgagtcaagttgttgagaggctcctaagtcattaacataactattaatgg |
26733371 |
T |
|
| Q |
312 |
caagtacaatgaataaccatctctcct |
338 |
Q |
| |
|
|| | |||||||||||||||||||||| |
|
|
| T |
26733370 |
catgcacaatgaataaccatctctcct |
26733344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 180 - 400
Target Start/End: Complemental strand, 26692089 - 26691851
Alignment:
| Q |
180 |
aattatgatgcaaagagaatggaaactttggcaaatgttgcattggattgtgtacaagaagataaagatgttagacccaccatgagtcaagttgttgaga |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
26692089 |
aattatgatgcaaagagaatggaaactttgacaaatgttgctttggattgtgtggctgaagaaaaagatgttagacctaccatgagtcaagttgttgaga |
26691990 |
T |
|
| Q |
280 |
ggctcctaagtcatcaacataactattaatggcaagtacaatgaataaccatctctc------------------ctgtttcacttcttgtgtttcaatt |
361 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
26691989 |
ggctcataagtcattaacataactattaatggcatgcacaatgaataaccatctctccttattactattattcaactgtttcacttcttgtaattcaatt |
26691890 |
T |
|
| Q |
362 |
attttctagatgtaatgtgatttaagaacttatgattag |
400 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
26691889 |
attttctagatgtagtgtgatttaagaatgtatgattag |
26691851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 26675082 - 26675005
Alignment:
| Q |
222 |
ttggattgtgtacaagaagataaagatgttagacccaccatgagtcaagttgttgagaggctcctaagtcatcaacat |
299 |
Q |
| |
|
|||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
26675082 |
ttggattgtgtagagaaagagaaagatgttagacccaccatgagtcaagttgttgagaggctccaaagtcatcaacat |
26675005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 400
Target Start/End: Complemental strand, 26733327 - 26733264
Alignment:
| Q |
337 |
ctgtttcacttcttgtgtttcaattattttctagatgtaatgtgatttaagaacttatgattag |
400 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
26733327 |
ctgtttcactacttgtaattcaattattttctagatgtattgtgatttaagaatgtatgattag |
26733264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 253 - 299
Target Start/End: Complemental strand, 26692300 - 26692254
Alignment:
| Q |
253 |
gacccaccatgagtcaagttgttgagaggctcctaagtcatcaacat |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
26692300 |
gacccaccatgagtcaagttgttgagaggctccaaagtcatgaacat |
26692254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 26675294 - 26675240
Alignment:
| Q |
13 |
tggtgttggagatgattactggaaagagtccaacaacaggtatccaaatcaaaga |
67 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| || ||||| |||||| ||| |
|
|
| T |
26675294 |
tggtgttggagatgattaccggaaagagtccaacgacctgtatcgaaatcacaga |
26675240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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