View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260_low_1 (Length: 949)
Name: NF8260_low_1
Description: NF8260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 443 - 881
Target Start/End: Complemental strand, 6956893 - 6956441
Alignment:
| Q |
443 |
agaaatatggtgaagatgttttgaaacgattctacacgttacactgcaatccaccagaaataccaatggagatgggaatcaaactcggcaaagatgttga |
542 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6956893 |
agaaatatggtgaagatgttttgaaaagattctacacgttacactgcaatccaccagaaataccaatagagatgggaatcaaactcggcaaagatgttga |
6956794 |
T |
|
| Q |
543 |
tgagaatctagttgactctacattgtataagaaaattataggctcactgagatacttaagcaatacaaacctaattttacattccttgtgggataagtaa |
642 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6956793 |
tgagaatctagttgactctacattgtataagaaaattataggctcactgagatacttaagcaatacaaacctaatttgacattccttgtgggataagtaa |
6956694 |
T |
|
| Q |
643 |
gcaaattcatgaagaaaaaagtacatttgggtaattattcatgtttagtgaagcttcaatctcatagtgctcaaagaaacaaggaatagttgcattatcc |
742 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6956693 |
gcaaattcatgaagaaaaaagtacatttgggtaattattcacgtttagtgaagcttcaatctcatagtgctcaaagaaacaaggaatagttgcattatcc |
6956594 |
T |
|
| Q |
743 |
tcgtg--------------tgtagcaacctcatttgcagcatgtcaaggacttaaattaaaatgttgcttgaagatttgaagttaaatgaaactgaaaga |
828 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6956593 |
tcgtgtgttaagttgagtatgtagcaacctcatttgcagcatgtcaaggacttaaattaaaatgttgcttgaagatttgaagttaaatgaaactgaaaga |
6956494 |
T |
|
| Q |
829 |
atgagactattagtggataataagtcagctattgatttagcaaaacaccttgt |
881 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6956493 |
atgagactattagtggataataagtcagctattgatttagcaaaacaccttgt |
6956441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 13 - 412
Target Start/End: Complemental strand, 6958665 - 6958266
Alignment:
| Q |
13 |
gattagagtatagtagagtaagtacctgaagagttgcatcaccactaattgtaactacagagtccacatcattgacaggctttgtcaaattggttcgaat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6958665 |
gattagagtatagtagagtaagtacctgaagagttgcatcaccactaattgtaactacagagtccacatcattgacaggctttgtcaaattggttcgaat |
6958566 |
T |
|
| Q |
113 |
ctcaactttccattcaatcaacaaaagtttatggaatcacattacacctatgcctatttttcaagagtaagaccgacaattttcaagcagaattcaaact |
212 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6958565 |
ctcaactttccattcaatcaacaaaagtttatggaatcacattacacctatgcctatttttcaagagtaagaccgacaattttcaagcagaattcaaact |
6958466 |
T |
|
| Q |
213 |
tcaaatgacactaaaaacctacaactattcctaccatattaccatccttataaaacataagccaaaaatcacaataacacttatattgatgtaatctaga |
312 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6958465 |
tcaaatgacactaaaaacctataactattcctaccaaagtaccatccttataaaacataagccaaaaatcacaataacacttatactgatgtaatctaga |
6958366 |
T |
|
| Q |
313 |
aaccacaaaccaaacctgcttgaaagagagctaaaggtgttaatcaaatattacaatataatgttacttgaaaatgaccatatcatagtaagatagattc |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6958365 |
aaccacaaaccaaacctgcttgaaagagagctaaaggtgttaatcaaatattgcaatataatgttacttgaaaatgaccatatcatagtaagatagattc |
6958266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 3e-23; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 878 - 934
Target Start/End: Complemental strand, 19862473 - 19862417
Alignment:
| Q |
878 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacgggttcggg |
934 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19862473 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacgggttcggg |
19862417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 878 - 934
Target Start/End: Complemental strand, 19867042 - 19866986
Alignment:
| Q |
878 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacgggttcggg |
934 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19867042 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacgggttcggg |
19866986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 878 - 934
Target Start/End: Complemental strand, 19871943 - 19871887
Alignment:
| Q |
878 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacgggttcggg |
934 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19871943 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacgggttcggg |
19871887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 878 - 934
Target Start/End: Complemental strand, 19876844 - 19876788
Alignment:
| Q |
878 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacgggttcggg |
934 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19876844 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacgggttcggg |
19876788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 878 - 934
Target Start/End: Complemental strand, 36585725 - 36585669
Alignment:
| Q |
878 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacgggttcggg |
934 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36585725 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacgggttcggg |
36585669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 229
Target Start/End: Complemental strand, 31081843 - 31081743
Alignment:
| Q |
133 |
acaaaagtttatggaatcacattacacct-atgcctatttttcaaga---gtaagaccgacaattttcaagcagaattcaaacttcaaatgacactaaaa |
228 |
Q |
| |
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||||||||||||||||||| | ||||| || |||||| ||||||| |||||||| |||||||| | ||||||| |||||||||||||||| |||| |
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| T |
31081843 |
acaaaagtttatggaatcatggtgcaccttattcctattattcaagaagtgtaagacctgcaattttctatcagaattaaaacttcaaatgacacaaaaa |
31081744 |
T |
|
| Q |
229 |
a |
229 |
Q |
| |
|
| |
|
|
| T |
31081743 |
a |
31081743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 881 - 934
Target Start/End: Original strand, 48580658 - 48580711
Alignment:
| Q |
881 |
tgtgtacagacccatttaagctagcttttcttcttcggtttgcacgggttcggg |
934 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48580658 |
tgtgtacagacccatttaagctagcttttcttcttcggtttgcacgggttcggg |
48580711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 6e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 878 - 934
Target Start/End: Original strand, 2064009 - 2064065
Alignment:
| Q |
878 |
ttgtgtgtacagacccatttaagctagcttttcttcttcggtttgcacgggttcggg |
934 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2064009 |
ttgtgtgtacagacccatttaaactagcttttcttcttcggtttgcacgggttcggg |
2064065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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