View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260_low_10 (Length: 348)
Name: NF8260_low_10
Description: NF8260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 21642748 - 21642420
Alignment:
| Q |
1 |
ttccaaccatacatatcaatcaacgaacacgaaacaacagtattccaatcaaacccacgtgttaaaaccatagaatgaaaacatctcccaaggtttacgt |
100 |
Q |
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| T |
21642748 |
ttccaaccatacatatcaatcaacgaacacgaaacaacagtattccaatcaaacccacgtgttaaaaccatagaatgaaagcatctcccaaggtttacgt |
21642649 |
T |
|
| Q |
101 |
cattcaacgtagaacaagctttaataacggaagatagagtaaaagcattgggttgaataggaaatgccaacatttcgtagaataaagatatcgactgatg |
200 |
Q |
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| T |
21642648 |
catttaacgcagaacaagctttgataacagaagatagagtaaaagcattgggttgaacaggaaatgccaacatttcgtagaataaagatatcgattgatg |
21642549 |
T |
|
| Q |
201 |
tggctggccggagcgagtgtaaccggagataagtgaagtccatgagataacatctttgacgtgaagtgagtcgaagagatgacgggcgtgagataaatgg |
300 |
Q |
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|||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21642548 |
tggcaggtcggagcgagtgtaaccggagataagtgaagtccatgagatgacatctttgacgtgaagtgagtcgaagagatgacgggcgtgagataaatgg |
21642449 |
T |
|
| Q |
301 |
gggccggggtttaatttaaagtaaagagt |
329 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
21642448 |
gggccggggtttaatttaaagtaaagagt |
21642420 |
T |
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