View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260_low_13 (Length: 312)
Name: NF8260_low_13
Description: NF8260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 97 - 298
Target Start/End: Complemental strand, 49524 - 49323
Alignment:
| Q |
97 |
gatgctcttatcatgtggatgctaagccgatttatataggagcttcgtttcagttgtcactacttcctcgtcgcacattattggttttaaagcctcaaac |
196 |
Q |
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| T |
49524 |
gatgctcttatcatgtggatgctaagccgatttatataggagcttcgtttcagttgtcactacttcctcatcgcacattataggttttaaagcctcgaac |
49425 |
T |
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| Q |
197 |
taggcaggattgcaggtttaagaatcacaagtccttgcaacaatatcacatttttggttgcttggctaaatggagagtagtgggtggtcttgccaagttg |
296 |
Q |
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| T |
49424 |
taggcaagattgcaggttcaagaatcacaagtccttgcaacaatatcacatttttggttgcttggctaaatggagagtagtgggtggtcttgccaagttg |
49325 |
T |
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| Q |
297 |
gt |
298 |
Q |
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|| |
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| T |
49324 |
gt |
49323 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 35150071 - 35150119
Alignment:
| Q |
225 |
aagtccttgcaacaatatcacatttttggttgcttggctaaatggagag |
273 |
Q |
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| T |
35150071 |
aagtccttgtaacaacatcacattttcagttgtttggctaaatggagag |
35150119 |
T |
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