View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8260_low_17 (Length: 264)

Name: NF8260_low_17
Description: NF8260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8260_low_17
NF8260_low_17
[»] chr4 (5 HSPs)
chr4 (20-158)||(37252927-37253065)
chr4 (21-155)||(37232684-37232815)
chr4 (67-146)||(37244881-37244960)
chr4 (21-151)||(37257059-37257198)
chr4 (21-63)||(37237700-37237742)
[»] chr6 (3 HSPs)
chr6 (68-152)||(14316682-14316766)
chr6 (67-152)||(14253954-14254039)
chr6 (73-152)||(14248144-14248223)
[»] scaffold0902 (1 HSPs)
scaffold0902 (75-152)||(3200-3277)
[»] scaffold1652 (1 HSPs)
scaffold1652 (78-153)||(595-670)
[»] scaffold1176 (1 HSPs)
scaffold1176 (73-152)||(371-450)
[»] scaffold1801 (1 HSPs)
scaffold1801 (74-114)||(268-308)


Alignment Details
Target: chr4 (Bit Score: 119; Significance: 7e-61; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 37253065 - 37252927
Alignment:
Q  20 cttactccatcatccatctccactcctccttctgaaggaccttccgaaaacggcgccgctttgaacagatttaccgttgccggatctgctgctgtggtgg 119  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  37253065 cttactccatcatccatttccactcctccttccgaaggaccttccgaaaacggtgccgctttgaacagatttaccgttgccggatctgctgctgtagtgg 37252966  T
Q  120 ttttcgccgccgctttgatgctatagagagttactcgag 158  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  37252965 ttttcgccgccgctttgatactatagagagttactcgag 37252927  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 37232815 - 37232684
Alignment:
Q  21 ttactccatcatccatctccactcctccttctgaaggaccttccgaaaacggcgccgctttgaacagatttaccgttgccggatctgctgctgtggtggt 120  Q
    ||||||||||||| ||||||||||||||| |||||| ||| ||   |||||||||||||||||| ||||| ||||||||||||||||||||||| ||| |    
T  37232815 ttactccatcatcgatctccactcctcctgctgaagcaccatc---aaacggcgccgctttgaatagattcaccgttgccggatctgctgctgttgtgat 37232719  T
Q  121 tttcgccgccgctttgatgctatagagagttactc 155  Q
    |||||| |||||||||||| | |||||||||||||    
T  37232718 tttcgctgccgctttgatgatgtagagagttactc 37232684  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 37244960 - 37244881
Alignment:
Q  67 aaacggcgccgctttgaacagatttaccgttgccggatctgctgctgtggtggttttcgccgccgctttgatgctataga 146  Q
    ||||||||||||||| |||||||| || |||||||||||||||||||| ||||||||||| || | ||||||| ||||||    
T  37244960 aaacggcgccgctttcaacagattcactgttgccggatctgctgctgttgtggttttcgctgctgttttgatgatataga 37244881  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 37257198 - 37257059
Alignment:
Q  21 ttactccatcatccatctccactcctccttctgaag------gaccttccgaaaa---cggcgccgctttgaacagatttaccgttgccggatctgctgc 111  Q
    ||||||||||||||||||| ||| ||||||||||||       |||||| || ||   || ||||||||| |||||||| |||||||| |||||||||||    
T  37257198 ttactccatcatccatctctactactccttctgaagcaccttcaccttcagacaactccgccgccgcttttaacagattcaccgttgctggatctgctgc 37257099  T
Q  112 tgtggtggttttcgccgccgctttgatgctatagagagtt 151  Q
    |||  ||||||||||||| ||||||||| | |||||||||    
T  37257098 tgttatggttttcgccgctgctttgatgatgtagagagtt 37257059  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 37237742 - 37237700
Alignment:
Q  21 ttactccatcatccatctccactcctccttctgaaggaccttc 63  Q
    ||||||||||||||||||| |||||||||||||||| ||||||    
T  37237742 ttactccatcatccatctctactcctccttctgaagcaccttc 37237700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 68 - 152
Target Start/End: Complemental strand, 14316766 - 14316682
Alignment:
Q  68 aacggcgccgctttgaacagatttaccgttgccggatctgctgctgtggtggttttcgccgccgctttgatgctatagagagtta 152  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||| || ||||||||| | ||||||||||    
T  14316766 aacgacgccgctttgaacagatttacccttgccggatctgctgctgtcgtggttttcgctgctgctttgatgatgtagagagtta 14316682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 67 - 152
Target Start/End: Complemental strand, 14254039 - 14253954
Alignment:
Q  67 aaacggcgccgctttgaacagatttaccgttgccggatctgctgctgtggtggttttcgccgccgctttgatgctatagagagtta 152  Q
    ||||| ||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| || ||||||||| | ||||||||||    
T  14254039 aaacgacgccgctttgaacagatttacagttgctggatctgctgctgtcgtggttttcgctgctgctttgatgatgtagagagtta 14253954  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 152
Target Start/End: Complemental strand, 14248223 - 14248144
Alignment:
Q  73 cgccgctttgaacagatttaccgttgccggatctgctgctgtggtggttttcgccgccgctttgatgctatagagagtta 152  Q
    ||||||||||||||||||||| |||||||||||| ||||||| |||||||| |  || ||||||||| | ||||||||||    
T  14248223 cgccgctttgaacagatttacagttgccggatctactgctgtcgtggtttttgttgctgctttgatgatgtagagagtta 14248144  T

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Target: scaffold0902 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 3277 - 3200
Alignment:
Q  75 ccgctttgaacagatttaccgttgccggatctgctgctgtggtggttttcgccgccgctttgatgctatagagagtta 152  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||| | || ||||||||| | ||||||||||    
T  3277 ccgctttgaacagatttacagttgccggatctgctgctgtcgtggttttcacggctgctttgatgatgtagagagtta 3200  T

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Target: scaffold1652 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 153
Target Start/End: Original strand, 595 - 670
Alignment:
Q  78 ctttgaacagatttaccgttgccggatctgctgctgtggtggttttcgccgccgctttgatgctatagagagttac 153  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||| | || ||||||||| | |||||||||||    
T  595 ctttgaacagatttacagttgccggatctgctgctgtcgtggttttcactgctgctttgatgatgtagagagttac 670  T

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Target: scaffold1176 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 152
Target Start/End: Original strand, 371 - 450
Alignment:
Q  73 cgccgctttgaacagatttaccgttgccggatctgctgctgtggtggttttcgccgccgctttgatgctatagagagtta 152  Q
    ||||||||||||||||||||| |||||||||||| ||||||| |||||||||   || ||||||||| | ||||||||||    
T  371 cgccgctttgaacagatttacagttgccggatctactgctgtcgtggttttcattgctgctttgatgatgtagagagtta 450  T

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Target: scaffold1801 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1801
Description:

Target: scaffold1801; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 268 - 308
Alignment:
Q  74 gccgctttgaacagatttaccgttgccggatctgctgctgt 114  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  268 gccgctttgaacagatttacagttgccggatctgctgctgt 308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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