View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260_low_20 (Length: 246)
Name: NF8260_low_20
Description: NF8260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260_low_20 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 246
Target Start/End: Original strand, 8254870 - 8255102
Alignment:
| Q |
14 |
gacatcagagataatcgaacctgagacctctgaaacagtataaattaattttgtttattttattattggataaatgaaaatcacatgcaccttaattgat |
113 |
Q |
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| T |
8254870 |
gacaccagagataatcgaacctgagacctctgaaacaatataaattaatttagtttattttattattgaataaatgaaaatcacatgcgccttaattgat |
8254969 |
T |
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| Q |
114 |
agtgagagttcagaaaacatatacttatcccttggatttattcctgaacttccactatcaattaagaagctccagttgtcggattcattccaacttttac |
213 |
Q |
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| T |
8254970 |
agtgaaagttcagaaaacatatacttatcccttagatttattcctgaactcccactatcaattaagaagctccagttgtcggattcattccaacttttac |
8255069 |
T |
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| Q |
214 |
atatatgagattcacttaattagataatatggt |
246 |
Q |
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| T |
8255070 |
atatatgagattcacttaattagataatatggt |
8255102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 86 - 235
Target Start/End: Original strand, 31243200 - 31243349
Alignment:
| Q |
86 |
aatgaaaatcacatgcaccttaattgatagtgagagttcagaaaacatatacttatcccttggatttattcctgaacttccactatcaattaagaagctc |
185 |
Q |
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||||||||||||||||| ||||||||||||| |||||||| |||| | ||||||||| || |||||| || |||||| ||||| |||||||||||||| |
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| T |
31243200 |
aatgaaaatcacatgcagcttaattgatagtttgagttcaggaaacgtgtacttatccattagatttaatcttgaactctcactaccaattaagaagctc |
31243299 |
T |
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| Q |
186 |
cagttgtcggattcattccaacttttacatatatgagattcacttaatta |
235 |
Q |
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| T |
31243300 |
cgatggtcgcgttcattccatcttttacatgtatgagtttcactcaatta |
31243349 |
T |
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