View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260_low_25 (Length: 227)
Name: NF8260_low_25
Description: NF8260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260_low_25 |
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| [»] scaffold0329 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 49718 - 49516
Alignment:
| Q |
1 |
cttattggagtttgtttatggcgtttgaaaagtctatgaggatggttgaacaatggatatttggaaggtgtataaattttcatgccatgagccgtgcatg |
100 |
Q |
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| T |
49718 |
cttattggagtttgtttatggcgtttgaaaagtctatgaggatggttgagcaatggatatttggaaggtgtataaattttcataccatgagccgtgcatg |
49619 |
T |
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| Q |
101 |
tcaccaccctgatggtctggtttgtgttactaatgagacatgggaatttaagagccacattctacatgtttcaaaaccatctagaaaagaccctgatact |
200 |
Q |
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| T |
49618 |
tcaccaccctgatggtctggtttgtgttactaatgagacatgagagtttaagagccacattctacatatttcaaaaccaactagaaaagaccctgatgct |
49519 |
T |
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| Q |
201 |
ctt |
203 |
Q |
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||| |
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| T |
49518 |
ctt |
49516 |
T |
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Target: scaffold0329 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 104
Target Start/End: Original strand, 16492 - 16591
Alignment:
| Q |
4 |
attggagtttgtttatggcgtttgaaaagtctatgaggatggttgaacaatggatatttggaaggtgtataaattttcatgccatgagccgtgcatgtca |
103 |
Q |
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| T |
16492 |
attggagtttgtttatggctttggaggagactttgaggat-gttaaacaatggatgtttggaatgtgtatgagttttcatgtcatgagtcgttcttgtca |
16590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 19287733 - 19287652
Alignment:
| Q |
4 |
attggagtttgtttatggcgtttgaaaagtctatgaggatggttgaacaatggatatttggaaggtgtataaattttcatgc |
85 |
Q |
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| T |
19287733 |
attggagtttatttatggctttggaggagtctttgaggatggttaaacaatggatgtgtgaaatgtgtatgagttttcatgc |
19287652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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