View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8260_low_26 (Length: 222)

Name: NF8260_low_26
Description: NF8260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8260_low_26
NF8260_low_26
[»] chr2 (3 HSPs)
chr2 (25-222)||(8020632-8020829)
chr2 (31-105)||(22965014-22965088)
chr2 (31-105)||(22399514-22399588)
[»] chr3 (13 HSPs)
chr3 (16-105)||(28150937-28151026)
chr3 (16-100)||(28003186-28003270)
chr3 (104-192)||(28151276-28151364)
chr3 (16-86)||(11420005-11420075)
chr3 (16-54)||(27919376-27919414)
chr3 (16-97)||(27459906-27459987)
chr3 (107-158)||(28054960-28055011)
chr3 (107-158)||(28065385-28065436)
chr3 (185-220)||(28151610-28151645)
chr3 (106-158)||(8539704-8539756)
chr3 (31-95)||(26236438-26236502)
chr3 (110-158)||(28149203-28149251)
chr3 (164-192)||(28161470-28161498)
[»] scaffold0257 (1 HSPs)
scaffold0257 (112-158)||(18626-18672)
[»] chr4 (2 HSPs)
chr4 (164-192)||(9328792-9328820)
chr4 (164-192)||(9382569-9382597)


Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 8020632 - 8020829
Alignment:
Q  25 caataataccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatatatacatatttcttgtattcttttttaca 124  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020632 caatattaccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatatatacatatttcttgtattcttttttaca 8020731  T
Q  125 ctttgtcaataccggaattgaattataccacaatattgacaggttagcgaaataagtgttgaagaaggtgacaaccaaagagcaatagcttctacttc 222  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8020732 ctttgtcagtaccggaattgaattataccacaatattgacaggttagcgaaataagtgttgaagaaggtgacaaccaaagagctatagcttctacttc 8020829  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 22965014 - 22965088
Alignment:
Q  31 taccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatatatacatatt 105  Q
    |||||||||||||| ||||||| |||||||| ||| ||| |||||| ||||||||||||||||||||||| ||||    
T  22965014 taccaacaaattcagaagtaatatgaaggccgtgtcaaattcacttcgatattcctctccaaatatatacttatt 22965088  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 22399514 - 22399588
Alignment:
Q  31 taccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatatatacatatt 105  Q
    |||||||||||||| ||||||| |||||||| ||| ||| ||||||  |||||||||||||||||||||| ||||    
T  22399514 taccaacaaattcagaagtaatatgaaggccgtgtcaaattcacttctatattcctctccaaatatatacttatt 22399588  T

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Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 28150937 - 28151026
Alignment:
Q  16 catcagtagcaataataccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatatatacatatt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28150937 catcagtagcaataataccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatatatacatatt 28151026  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 28003186 - 28003270
Alignment:
Q  16 catcagtagcaataataccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatatatac 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  28003186 catcagtagcaataaaaccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggataatcctctcccaatatatac 28003270  T

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Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 104 - 192
Target Start/End: Original strand, 28151276 - 28151364
Alignment:
Q  104 tttcttgtattcttttttacactttgtcaataccggaattgaattataccacaatattgacaggttagcgaaataagtgttgaagaagg 192  Q
    ||||||||||||||||| ||||||||||| ||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28151276 tttcttgtattctttttcacactttgtcagtacagaaattgaattatactacaatattgacaggttagcgaaataagtgttgaagaagg 28151364  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 11420005 - 11420075
Alignment:
Q  16 catcagtagcaataataccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcct 86  Q
    ||||| ||||||||||||||||||||||| |||||||||  | |||| || |||||| |||| ||||||||    
T  11420005 catcaatagcaataataccaacaaattcagaagtaattttcaagccacgtcaaaatctcttgcatattcct 11420075  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 27919376 - 27919414
Alignment:
Q  16 catcagtagcaataataccaacaaattcaaaagtaattt 54  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  27919376 catcagtagcaataataccaacaaattcagaagtaattt 27919414  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 27459987 - 27459906
Alignment:
Q  16 catcagtagcaataataccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatata 97  Q
    |||||||||||| |||||||||| | ||| ||||||| || |||||||||  || || |||| |||||| ||||||||||||    
T  27459987 catcagtagcaacaataccaacagactcagaagtaatgtgcaggccatgtcgaagtcccttgcatattcatctccaaatata 27459906  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 158
Target Start/End: Original strand, 28054960 - 28055011
Alignment:
Q  107 cttgtattcttttttacactttgtcaataccggaattgaattataccacaat 158  Q
    |||||||| ||||| ||||||||||||| | ||||||||||||||| |||||    
T  28054960 cttgtattttttttaacactttgtcaatgcaggaattgaattatactacaat 28055011  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 158
Target Start/End: Original strand, 28065385 - 28065436
Alignment:
Q  107 cttgtattcttttttacactttgtcaataccggaattgaattataccacaat 158  Q
    |||||||| ||||| ||||||||||||| | ||||||||||||||| |||||    
T  28065385 cttgtattttttttaacactttgtcaatgcaggaattgaattatactacaat 28065436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 28151610 - 28151645
Alignment:
Q  185 gaagaaggtgacaaccaaagagcaatagcttctact 220  Q
    ||||||||||||||||||||||||||||||| ||||    
T  28151610 gaagaaggtgacaaccaaagagcaatagcttatact 28151645  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 8539756 - 8539704
Alignment:
Q  106 tcttgtattcttttttacactttgtcaataccggaattgaattataccacaat 158  Q
    ||||||||||||||| |||||||  |||| | ||||||||||||||| |||||    
T  8539756 tcttgtattctttttaacacttttccaatgcaggaattgaattatactacaat 8539704  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 26236502 - 26236438
Alignment:
Q  31 taccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaata 95  Q
    |||||||||||| | |||||||||| || |||||| ||| || | |||| |||||||||||||||    
T  26236502 taccaacaaattaagaagtaatttgtagaccatgtaaaattcccatggaaattcctctccaaata 26236438  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 28149203 - 28149251
Alignment:
Q  110 gtattcttttttacactttgtcaataccggaattgaattataccacaat 158  Q
    ||||||||||  ||||||||||||| | ||||||||||||||| |||||    
T  28149203 gtattcttttgaacactttgtcaatgcaggaattgaattatactacaat 28149251  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 192
Target Start/End: Original strand, 28161470 - 28161498
Alignment:
Q  164 caggttagcgaaataagtgttgaagaagg 192  Q
    |||||||||||||||||||||||||||||    
T  28161470 caggttagcgaaataagtgttgaagaagg 28161498  T

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Target: scaffold0257 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 18626 - 18672
Alignment:
Q  112 attcttttttacactttgtcaataccggaattgaattataccacaat 158  Q
    ||||||||| ||||||||||||| | ||||||||||||||| |||||    
T  18626 attctttttgacactttgtcaatgcaggaattgaattatactacaat 18672  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 192
Target Start/End: Complemental strand, 9328820 - 9328792
Alignment:
Q  164 caggttagcgaaataagtgttgaagaagg 192  Q
    |||||||||||||||||||||||||||||    
T  9328820 caggttagcgaaataagtgttgaagaagg 9328792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 192
Target Start/End: Complemental strand, 9382597 - 9382569
Alignment:
Q  164 caggttagcgaaataagtgttgaagaagg 192  Q
    |||||||||||||||||||||||||||||    
T  9382597 caggttagcgaaataagtgttgaagaagg 9382569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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