View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8260_low_8 (Length: 354)
Name: NF8260_low_8
Description: NF8260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 16 - 285
Target Start/End: Original strand, 5042695 - 5042964
Alignment:
| Q |
16 |
caatattcaatacatgattgcagaactctcacactctggggagatctgaannnnnnnnnnnnctttcaaaaatcatttaccatgtaatatgagaagacaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5042695 |
caatattcaatacatgattgcagaactctcacactctcggaagatctgaatactttttttttctttcaaaaatcatttaccatgtaatatgagaagacaa |
5042794 |
T |
|
| Q |
116 |
ttattaagcattagaaccacaaatagaataagttttactatatctgatgtgagtgacaagctcacacaaacggacatggatttacagctagataattaaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5042795 |
ttattaagcattagaaccacaaatagaataagttttactatatctgatgtgagtgacaagctcacacaaacagacatggatttacagctagataattaaa |
5042894 |
T |
|
| Q |
216 |
cnnnnnnnnnnnnntcaacaccgtattttttactttgatatgagaaatgatatttgtacaatcatgtaca |
285 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5042895 |
caaaaaagtaaaaatcaacaccgtattttttactttgatatgagaaatgatatttatacaatcatgtaca |
5042964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 280
Target Start/End: Original strand, 9311034 - 9311063
Alignment:
| Q |
251 |
tgatatgagaaatgatatttgtacaatcat |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
9311034 |
tgatatgagaaatgatatttgtacaatcat |
9311063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University