View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260_low_9 (Length: 350)
Name: NF8260_low_9
Description: NF8260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 234 - 304
Target Start/End: Original strand, 30310498 - 30310568
Alignment:
| Q |
234 |
aattacaaaaattaaataaattatcttcttcatcatcattttcgaaccaaaaattcatcatttttaaatcc |
304 |
Q |
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| T |
30310498 |
aattacaaaaattaaataaattatcttcttcatcatcatcttcgaaccaaaaattcatcatttttaaatcc |
30310568 |
T |
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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 223
Target Start/End: Original strand, 30310395 - 30310446
Alignment:
| Q |
172 |
gcgacgctaaccttttgatgtaacacttgttacaatatatatgacatgataa |
223 |
Q |
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| T |
30310395 |
gcgacgctaaccttttgatgtaacgcttgttacaataaatatgatatgataa |
30310446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 30309791 - 30309876
Alignment:
| Q |
20 |
aactggacgggactgagaagaattagggattttcttcaacnnnnnnnnnntcaaatcaaatcaaattttgggataaaaaaggagaccttc |
109 |
Q |
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| T |
30309791 |
aactggaccggactgagaagaattagggattttcttcaacaaaaaaaat---aaatcaaat-aaattttgggataaaaaaggagaccttc |
30309876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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