View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8261_high_12 (Length: 444)

Name: NF8261_high_12
Description: NF8261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8261_high_12
NF8261_high_12
[»] chr6 (14 HSPs)
chr6 (26-424)||(5163655-5164035)
chr6 (26-176)||(5889108-5889258)
chr6 (26-224)||(5883951-5884143)
chr6 (26-216)||(5853790-5853974)
chr6 (26-216)||(5830849-5831033)
chr6 (26-216)||(5881235-5881419)
chr6 (26-180)||(5821517-5821671)
chr6 (26-176)||(5761957-5762106)
chr6 (264-313)||(5881478-5881527)
chr6 (255-313)||(5884186-5884243)
chr6 (264-313)||(5762193-5762242)
chr6 (51-106)||(2715409-2715464)
chr6 (264-303)||(5831095-5831134)
chr6 (264-303)||(5854036-5854075)
[»] scaffold0087 (10 HSPs)
scaffold0087 (26-216)||(40962-41146)
scaffold0087 (28-168)||(30931-31071)
scaffold0087 (26-176)||(13523-13672)
scaffold0087 (28-169)||(20583-20724)
scaffold0087 (26-176)||(34921-35070)
scaffold0087 (264-313)||(41205-41254)
scaffold0087 (264-313)||(13759-13808)
scaffold0087 (264-312)||(20824-20872)
scaffold0087 (264-312)||(31172-31220)
scaffold0087 (264-303)||(35164-35203)


Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 26 - 424
Target Start/End: Original strand, 5163655 - 5164035
Alignment:
Q  26 tgtcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaacttagaaggcaaaat 125  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||                  |||||||||||||||||||||||    
T  5163655 tgtcaagaaaccatctttcaggtaaaatgccaacaaacttttcaaatttgacatttctt------------------ttcaacaacttagaaggcaaaat 5163736  T
Q  126 tccactaagcactcaactacaatcttttgatccctctgcatatgtcgggaacagttatgagtgactttgtggacaaccactcataaatcttcgccctgga 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||    
T  5163737 tccactaagcactcaactacaatcttttgatccctctgcatatgtcgggaacagttatgaatgactttgtggacagccactcataaatctttgccctgga 5163836  T
Q  226 gatagccatgacacacatgttaccagtgtagatgaagaatgaagataagctcataaccattgggttttatgttagcttagggattggtctctttaacggc 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5163837 gatagccatgacacacatgttaccagtgtagatgaagaatgaagataagctcataaccattgggttttatgttagcttagggcttggtctctttaacggc 5163936  T
Q  326 tttgtctctttttctcttgtatttattgaaaactaagtttgtgaactc-agccaagtacggactcgaatttcagattttttaatttacataaattatgta 424  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| || |||| ||||||| |||||||||||||||| |||||  |||||||||||    
T  5163937 tttgtctctttttctcttgtatttattgaaaact-agtttgtgaactcgagtcaagcacggactagaatttcagatttttttatttatttaaattatgta 5164035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 26 - 176
Target Start/End: Complemental strand, 5889258 - 5889108
Alignment:
Q  26 tgtcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaacttagaaggcaaaat 125  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5889258 tgtcaagaaaccatctttcgggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaataacttagaaggcaaaat 5889159  T
Q  126 tccactaagcactcaactacaatcttttgatccctctgcatatgtcgggaa 176  Q
    ||||||||||||||||||||||||||||||||| ||| |||| || |||||    
T  5889158 tccactaagcactcaactacaatcttttgatccttctacatacgtggggaa 5889108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 26 - 224
Target Start/End: Original strand, 5883951 - 5884143
Alignment:
Q  26 tgtcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaacttagaaggcaaaat 125  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||    
T  5883951 tgtcaagaaaccatctttcgggtagaatgccaacaagcttttcaaatttgacatttcttggttacatgaacctgtcgttcaacaacttagaaggcaaaat 5884050  T
Q  126 tccactaagcactcaactacaatcttttgatccctctgcatatgtcgggaacagttatgagtgactttgtggacaaccactcataaatcttcgccctgg 224  Q
    |||||||||||||||||||||| |||||||| ||||| ||||||| ||||      || |  |||||||||||||||| |||||||||||| |||||||    
T  5884051 tccactaagcactcaactacaaacttttgattcctcttcatatgtgggga------ataatcgactttgtggacaaccgctcataaatctttgccctgg 5884143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 26 - 216
Target Start/End: Original strand, 5853790 - 5853974
Alignment:
Q  26 tgtcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaacttagaaggcaaaat 125  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5853790 tgtcaagaaaccatctttctggtagaatgccaacaagcttttcaaatttaacatctcttagttacatgaacttgtctttcaacaacttagaaggcaaaat 5853889  T
Q  126 tccactaagcactcaactacaatcttttgatccctctgcatatgtcgggaacagttatgagtgactttgtggacaaccactcataaatctt 216  Q
    |||| |||||||||| |||||| |||||||| ||| | ||||||| ||||      || |  |||||||||||| ||||||||||||||||    
T  5853890 tccaataagcactcagctacaaacttttgattcctattcatatgtgggga------ataatcgactttgtggaccaccactcataaatctt 5853974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 26 - 216
Target Start/End: Original strand, 5830849 - 5831033
Alignment:
Q  26 tgtcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaacttagaaggcaaaat 125  Q
    ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||| |||||||| ||||||||    
T  5830849 tgtcaagaaaccatctttctggtagaatgccaacgagcttttcaaatttgacatttcttaataacatgaacttgtctttcaataacttagacggcaaaat 5830948  T
Q  126 tccactaagcactcaactacaatcttttgatccctctgcatatgtcgggaacagttatgagtgactttgtggacaaccactcataaatctt 216  Q
    |||| ||||||||||||||||| |||||||| ||| | ||||||| ||||      || |  |||||||||||| ||||||||||||||||    
T  5830949 tccagtaagcactcaactacaaacttttgattcctattcatatgtgggga------ataatcgactttgtggaccaccactcataaatctt 5831033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 26 - 216
Target Start/End: Original strand, 5881235 - 5881419
Alignment:
Q  26 tgtcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaacttagaaggcaaaat 125  Q
    |||||||||| ||||| |  ||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||| |||||||| |||||||| |||||    
T  5881235 tgtcaagaaatcatctctacggtaaaatgccaacaagcttttcaagtttgacatttcttggttacatgaacctgtcgttcaacaatttagaagggaaaat 5881334  T
Q  126 tccactaagcactcaactacaatcttttgatccctctgcatatgtcgggaacagttatgagtgactttgtggacaaccactcataaatctt 216  Q
    ||||||| | |||||||||||| ||||| |||||||||||||||| |||||||||       ||||||||||||| |||||||||||||||    
T  5881335 tccactaggtactcaactacaaacttttcatccctctgcatatgtggggaacagt------ggactttgtggacagccactcataaatctt 5881419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 26 - 180
Target Start/End: Original strand, 5821517 - 5821671
Alignment:
Q  26 tgtcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaacttagaaggcaaaat 125  Q
    |||||||||| ||||| |  ||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||| |||||||| |||||||| |||||    
T  5821517 tgtcaagaaatcatctctacggtaaaatgccaacaagcttttcaagtttgacatttcttggttacatgaacctgtcattcaacaatttagaagggaaaat 5821616  T
Q  126 tccactaagcactcaactacaatcttttgatccctctgcatatgtcgggaacagt 180  Q
    |||||||||||||||||||||| |||||||||| ||| ||||||| |||||||||    
T  5821617 tccactaagcactcaactacaaacttttgatccatcttcatatgtggggaacagt 5821671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 26 - 176
Target Start/End: Original strand, 5761957 - 5762106
Alignment:
Q  26 tgtcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaacttagaaggcaaaat 125  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||    
T  5761957 tgtcaataaaccatctttcaggtagaatgccaacaagcttttcaaatttgacatttcttagtcacatgaacttgt-tttcaacaacttagaaggcaatat 5762055  T
Q  126 tccactaagcactcaactacaatcttttgatccctctgcatatgtcgggaa 176  Q
    |||  ||||||||||||||||| ||||||  |||||  ||||||| |||||    
T  5762056 tcccataagcactcaactacaaacttttggcccctcatcatatgttgggaa 5762106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 264 - 313
Target Start/End: Original strand, 5881478 - 5881527
Alignment:
Q  264 atgaagataagctcataaccattgggttttatgttagcttagggattggt 313  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||    
T  5881478 atgaagataagctcataaccattgggttttatgttagcttggtgattggt 5881527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 255 - 313
Target Start/End: Original strand, 5884186 - 5884243
Alignment:
Q  255 agatgaagaatgaagataagctcataaccattgggttttatgttagcttagggattggt 313  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||| ||||||| |||||    
T  5884186 agatgaaga-tgaagataagctcataacctttgggttttatgttaccttagggcttggt 5884243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 264 - 313
Target Start/End: Original strand, 5762193 - 5762242
Alignment:
Q  264 atgaagataagctcataaccattgggttttatgttagcttagggattggt 313  Q
    |||||||||||||||||||| ||||||||||||||||||| | |||||||    
T  5762193 atgaagataagctcataacctttgggttttatgttagcttggtgattggt 5762242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 106
Target Start/End: Complemental strand, 2715464 - 2715409
Alignment:
Q  51 aatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttca 106  Q
    |||||||||||||||| | |||||||||||  | ||||||||||||||||||||||    
T  2715464 aatgccaacaagctttgctaatttgacattcataagttacatgaacttgtctttca 2715409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 264 - 303
Target Start/End: Original strand, 5831095 - 5831134
Alignment:
Q  264 atgaagataagctcataaccattgggttttatgttagctt 303  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  5831095 atgaagataagctcataacctttgggttttatgttagctt 5831134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 264 - 303
Target Start/End: Original strand, 5854036 - 5854075
Alignment:
Q  264 atgaagataagctcataaccattgggttttatgttagctt 303  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  5854036 atgaagataagctcataacctttgggttttatgttagctt 5854075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 124; Significance: 1e-63; HSPs: 10)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 26 - 216
Target Start/End: Original strand, 40962 - 41146
Alignment:
Q  26 tgtcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaacttagaaggcaaaat 125  Q
    ||||||||||||||||||| || | ||||||| ||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  40962 tgtcaagaaaccatctttctgggagaatgccaccaagcttttcgtatttgacatttcttagttacatgaacttgtcgttcaacaacttagaaggtaaaat 41061  T
Q  126 tccactaagcactcaactacaatcttttgatccctctgcatatgtcgggaacagttatgagtgactttgtggacaaccactcataaatctt 216  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||       ||||||||||||| |||||||||||||||    
T  41062 tccactaagcactcaactacaatcttttgatccctctacatatgtcgggaacagt------ggactttgtggacagccactcataaatctt 41146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 28 - 168
Target Start/End: Original strand, 30931 - 31071
Alignment:
Q  28 tcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaacttagaaggcaaaattc 127  Q
    |||||||| ||| ||||||||| ||||||||| |||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  30931 tcaagaaaacatatttcaggtagaatgccaacgagcttaacaaatttgacatttcttagttacatggacttgtctttcaacaacttagaaggaaaaattc 31030  T
Q  128 cactaagcactcaactacaatcttttgatccctctgcatat 168  Q
    ||||||||||||||||||||||||||||||| ||| |||||    
T  31031 cactaagcactcaactacaatcttttgatccatctacatat 31071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 26 - 176
Target Start/End: Original strand, 13523 - 13672
Alignment:
Q  26 tgtcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaacttagaaggcaaaat 125  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||    
T  13523 tgtcaagaaaccatctttcaggtagaatgccaacaagcttttcaaatttgacatttcttagtcacatgaacttgt-tttcaacaacttagaaggcaatat 13621  T
Q  126 tccactaagcactcaactacaatcttttgatccctctgcatatgtcgggaa 176  Q
    |||  ||||||||||||||||| ||||||  |||||  ||||||| |||||    
T  13622 tcccataagcactcaactacaaacttttggcccctcatcatatgttgggaa 13672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 28 - 169
Target Start/End: Original strand, 20583 - 20724
Alignment:
Q  28 tcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaacttagaaggcaaaattc 127  Q
    |||||||| ||| |||| |||| |||||| || ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  20583 tcaagaaatcatatttctggtagaatgccgacgagcttctcaaatttgacatttcttagttacatggacttgtctttcaacaacttagaaggaaaaattc 20682  T
Q  128 cactaagcactcaactacaatcttttgatccctctgcatatg 169  Q
    ||||| ||||||||||||||||||||| ||| ||| ||||||    
T  20683 cactatgcactcaactacaatcttttggtccatctacatatg 20724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 26 - 176
Target Start/End: Original strand, 34921 - 35070
Alignment:
Q  26 tgtcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaacttagaaggcaaaat 125  Q
    ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||| ||||| | ||||||||||||||||||| |||||||| | ||||||    
T  34921 tgtcaagaaaccatctttctggtagaatgccaacgagcttttcaaatttgacatctcttaataacatgaacttgtctttcaataacttagacgacaaaat 35020  T
Q  126 tccactaagcactcaactacaatcttttgatccctctgcatatgtcgggaa 176  Q
    |||| |||||||||||||||||  ||||||| ||| | ||||||| |||||    
T  35021 tccagtaagcactcaactacaa-attttgattcctattcatatgtggggaa 35070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 264 - 313
Target Start/End: Original strand, 41205 - 41254
Alignment:
Q  264 atgaagataagctcataaccattgggttttatgttagcttagggattggt 313  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||    
T  41205 atgaagataagctcataaccattgggttttatgttagcttggtgattggt 41254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 264 - 313
Target Start/End: Original strand, 13759 - 13808
Alignment:
Q  264 atgaagataagctcataaccattgggttttatgttagcttagggattggt 313  Q
    |||||||||||||||||||| ||||||||||||||||||| | |||||||    
T  13759 atgaagataagctcataacctttgggttttatgttagcttggtgattggt 13808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 20824 - 20872
Alignment:
Q  264 atgaagataagctcataaccattgggttttatgttagcttagggattgg 312  Q
    ||||||||||||| |||||| ||||||||||||||||||| ||| ||||    
T  20824 atgaagataagctaataacctttgggttttatgttagcttggggcttgg 20872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 31172 - 31220
Alignment:
Q  264 atgaagataagctcataaccattgggttttatgttagcttagggattgg 312  Q
    ||||||||||||| |||||| ||||||||||||||||||| ||| ||||    
T  31172 atgaagataagctaataacctttgggttttatgttagcttggggcttgg 31220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 303
Target Start/End: Original strand, 35164 - 35203
Alignment:
Q  264 atgaagataagctcataaccattgggttttatgttagctt 303  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  35164 atgaagataagctcataacatttgggttttatgttagctt 35203  T

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