View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8261_high_2 (Length: 788)
Name: NF8261_high_2
Description: NF8261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8261_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 411; Significance: 0; HSPs: 19)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Complemental strand, 43312813 - 43312315
Alignment:
| Q |
1 |
cgcaagtatggatttctatctatactgatatatactttgtgcttcttgttgatcgaaaatagnnnnnnnnagttgttgtttaggatgaagaaactagaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
43312813 |
cgcaagtatggatttctatctatactgatatatactttgtgcttcttgttgatcgaaaatagttttttttagttgttgtttaggatgaagaaactagaag |
43312714 |
T |
|
| Q |
101 |
tggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgtctccgtgtaaccgtctt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
43312713 |
tggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcatcaaccgtgataaccgtctccgtgtaaccgtctt |
43312614 |
T |
|
| Q |
201 |
ggtcatcaagtttccaaacagtcctgcagaaaccctttcctcctctgactcagaaaatctccatgtcattaacctccctgaaactactcatgttccctcc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
43312613 |
ggtcatcaagtttccaaacagtcctgcagaaaccctttcctcctctgactcagaaaatctccatgtcattaacctccctgaaaccactcatgttccctcc |
43312514 |
T |
|
| Q |
301 |
acctccaacgtaggtagctctgtagctgctcttgttgaaacccaaaaggccaatgttaaagaagctgtttcaaatatcactggaaagctcgctgccttcg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43312513 |
acctccaacgtaggtagctctgtagctgctcttgttgaaacccaaaaggccaatgttaaagaagctgtttcaaatatcactggaaagctcgctgccttcg |
43312414 |
T |
|
| Q |
401 |
ttgttgacatgttctgcaccaccatgatcaatgttgccaatgagttcaatgtccctacgctcgttttcttcacttctggtgttgcttcccttggtttga |
499 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| || ||||| || ||||||| | ||||| | ||||||||| |||||||||| ||||||||||| |
|
|
| T |
43312413 |
ttgttgacatgttctgcaccaccatgattgatgtagctaatgactttggtgtcccttccctcgtctacttcacttccggtgttgctttccttggtttga |
43312315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 388 - 770
Target Start/End: Original strand, 39475789 - 39476171
Alignment:
| Q |
388 |
ctcgctgccttcgttgttgacatgttctgcaccaccatgatcaatgttgccaatgagttcaatgtccctacgctcgttttcttcacttctggtgttgctt |
487 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39475789 |
ctcgccgccttcgttgttgacatgttctgcaccaccatgatcaatgttgccaatgagttcaatgtccctacgctcgttttcttcacttctggtgttgctt |
39475888 |
T |
|
| Q |
488 |
cccttggtttgaatctttacctttacactcttcgtgaacgagacaatgtcgattcgactcagctgctgctgcagaacgaggtagccatcccgagtttcgc |
587 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39475889 |
cccttggtttgaatctttacctttacactcttcgtgaacgagacaatgtcgattcgactcagctgctgctgcagaacgaggtagccatcccgagtttcgc |
39475988 |
T |
|
| Q |
588 |
caaccccgttccttcaaaatcattgcccagttttgtgctacacaaggaatgggaatcgtttttcatgagacttgcaagaggcctcaagaaagtaaatggc |
687 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39475989 |
caaccccgttccttcaaaatcattgcccagttttgtgctacacaaggaatgggagtcgtttttcatgagacttgcaagaggcctcaagaaagtaaatggc |
39476088 |
T |
|
| Q |
688 |
attatagtaaactcatttgaagagctagaatcacatgcggttcactcttttttctctcatcctgatctatcggatatactgat |
770 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39476089 |
attatagtaaactcatttgaagagctagaatcacatgcggttcactcttttttctctcatcctgatctatcggatatactgat |
39476171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 394 - 766
Target Start/End: Original strand, 39483546 - 39483918
Alignment:
| Q |
394 |
gccttcgttgttgacatgttctgcaccaccatgatcaatgttgccaatgagttcaatgtccctacgctcgttttcttcacttctggtgttgcttcccttg |
493 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
39483546 |
gccttcgttgttgacatgttctgcaccaccatgattgatgttgccaatgagttcaatgtccctacgctcgttttctacactttcagtgttgcttcccttg |
39483645 |
T |
|
| Q |
494 |
gtttgaatctttacctttacactcttcgtgaacgagacaatgtcgattcgactcagctgctgctgcagaacgaggtagccatcccgagtttcgccaaccc |
593 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||| |||||| |||||||||||||| |||| |||| ||||||||||||||| |||||||| |
|
|
| T |
39483646 |
gtttgaatctttatcttcacactcttcgtgaacgagacaatatcgatttgactcagctgctgcaagagaaagaggcagccatcccgagttttgccaaccc |
39483745 |
T |
|
| Q |
594 |
cgttccttcaaaatcattgcccagttttgtgctacacaaggaatgggaatcgtttttcatgagacttgcaagaggcctcaagaaagtaaatggcattata |
693 |
Q |
| |
|
| |||||||||| ||||||| || ||||||| | |||| ||| |||| | ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
39483746 |
cattccttcaaatccattgcctagctttgtgcgaaacaaagaacgggagccatttttcatgagccttgcaagaggcctcaagaaagtaaatggcattata |
39483845 |
T |
|
| Q |
694 |
gtaaactcatttgaagagctagaatcacatgcggttcactcttttttctctcatcctgatctatcggatatac |
766 |
Q |
| |
|
||||| |||||| ||||||||||||| || |||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
39483846 |
gtaaattcattttaagagctagaatctcacgcggttcactcttttttcactcatccagatctatcggatatac |
39483918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 394 - 756
Target Start/End: Original strand, 39486754 - 39487116
Alignment:
| Q |
394 |
gccttcgttgttgacatgttctgcaccaccatgatcaatgttgccaatgagttcaatgtccctacgctcgttttcttcacttctggtgttgcttcccttg |
493 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||||| || || ||||| ||||| | ||||||||||| |||||||||| |||| |
|
|
| T |
39486754 |
gccttcgttgttgacatgttctgcaccaccatgattgatattgccaaagaattttccatccctgcgctcatcttcttcacttccggtgttgcttttcttg |
39486853 |
T |
|
| Q |
494 |
gtttgaatctttacctttacactcttcgtgaacgagacaatgtcgattcgactcagctgctgctgcagaacgaggtagccatcccgagtttcgccaaccc |
593 |
Q |
| |
|
|||||| || | ||| ||||||| |||||||||||| ||||||| |||||| |||||| ||||||||||||||||||||| ||||| |||||| | |
|
|
| T |
39486854 |
gtttgatgctccatcttcacactctgtttgaacgagacaacatcgattcaactcagttgctgcagcagaacgaggtagccatcccaagttttgccaactc |
39486953 |
T |
|
| Q |
594 |
cgttccttcaaaatcattgcccagttttgtgctacacaaggaatgggaatcgtttttcatgagacttgcaagaggcctcaagaaagtaaatggcattata |
693 |
Q |
| |
|
|||| || || ||||||||||| ||||||||||||||| |||||||||||||||| |||| | ||| |||| |||| ||||| ||||||| |
|
|
| T |
39486954 |
gattccaattaactcgttgcccagtttcctgctacacaaggaatatgaatcgtttttcatgaactttgccggtggcatcaaaaaagcaaatgccattata |
39487053 |
T |
|
| Q |
694 |
gtaaactcatttgaagagctagaatcacatgcggttcactcttttttctctcatcctgatcta |
756 |
Q |
| |
|
||||| |||||||||||| ||||||||||||| ||||| || ||||||||||||||||||||| |
|
|
| T |
39487054 |
gtaaattcatttgaagagttagaatcacatgctgttcaatcctttttctctcatcctgatcta |
39487116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 398 - 752
Target Start/End: Original strand, 39451293 - 39451647
Alignment:
| Q |
398 |
tcgttgttgacatgttctgcaccaccatgatcaatgttgccaatgagttcaatgtccctacgctcgttttcttcacttctggtgttgcttcccttggttt |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||| || || || |||| |||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
39451293 |
tcgttgttgacatgttctgcaccaccatgattgatattgccaaagaattttcagttcctatgctcgtcttcttcacttctggcgttgcttcccttggttt |
39451392 |
T |
|
| Q |
498 |
gaatctttacctttacactcttcgtgaacgagacaatgtcgattcgactcagctgctgctgcagaacgaggtagccatcccgagtttcgccaaccccgtt |
597 |
Q |
| |
|
||||||| | || | || || |||||||||||||| || ||||| |||||| ||| || |||||| ||| |||||||||||| |||||| || || |
|
|
| T |
39451393 |
gaatcttcatattcataccctccgtgaacgagacaacgttgattcaactcagttgcagcagcagaaagagttagccatcccgactttcgctcacttgttt |
39451492 |
T |
|
| Q |
598 |
ccttcaaaatcattgcccagttttgtgctacacaaggaatgggaatcgtttttcatgagacttgcaag-aggcctcaagaaagtaaatggcattatagta |
696 |
Q |
| |
|
||||||| |||||||| ||| || ||| ||||||||||||| ||||||||||||| ||| || |||||||||||| | |||||||||||||| |
|
|
| T |
39451493 |
ccttcaagctcattgcctggttccgtcctaagcaaggaatgggaaccgtttttcatgag-cttcatagaaggcctcaagaatgccgatggcattatagta |
39451591 |
T |
|
| Q |
697 |
aactcatttgaagagctagaatcacatgcggttcactcttttttctctcatcctga |
752 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||||| |||||| ||||||||| |
|
|
| T |
39451592 |
aattcatttgaagagctagaatcacacgcggttcactcctttttcaatcatcctga |
39451647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 391 - 756
Target Start/End: Complemental strand, 39458183 - 39457817
Alignment:
| Q |
391 |
gctgccttcgttgttgacatgttctgcaccaccatgatcaatgttgccaatgagttcaatgtccctacgctcgttttcttcacttctggtgttgcttccc |
490 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||| |||||| || || || ||||||||||||||| ||||||||||| |||||||||| || |
|
|
| T |
39458183 |
gctgcattcattgttgacatgttctgcaccaccatgattgatgttgtaaaagaattttctgtccctacgctcgtcttcttcacttccggtgttgctttcc |
39458084 |
T |
|
| Q |
491 |
ttggtttgaa-tctttacctttacactcttcgtgaacgagacaatgtcgattcgactcagctgctgctgcagaacgaggtagccatcccgagtttcgcca |
589 |
Q |
| |
|
|||||||||| |||| | || | | | | |||||||||||| || ||||| |||||| |||||| ||||| ||| | ||||||| ||||||| | |
|
|
| T |
39458083 |
ttggtttgaaatcttcatattcataatatgtttgaacgagacaacgttgattccactcagttgctgcagcagactgagttggccatccgaggtttcgcta |
39457984 |
T |
|
| Q |
590 |
accccgttccttcaaaatcattgcccagttttgtgctacacaaggaatgggaatcgtttttcatgagacttgcaagaggcctcaagaaagtaaatggcat |
689 |
Q |
| |
|
|| | ||||||||||| | |||||||||| ||||||| |||||||||||| || || |||||||| ||| | ||| |||||||| | ||| ||| |
|
|
| T |
39457983 |
actcagttccttcaaacactttgcccagttcagtgctacgcaaggaatgggagtccttcttcatgagctatgcgaaaggtctcaagaatgctgatgccat |
39457884 |
T |
|
| Q |
690 |
tatagtaaactcatttgaagagctagaatcacatgcggttcactcttttttctctcatcctgatcta |
756 |
Q |
| |
|
||| ||||| |||||||||||||||||||| |||| |||||||| ||| ||||||||||||||||| |
|
|
| T |
39457883 |
tattgtaaattcatttgaagagctagaatcctatgccgttcactcctttgtctctcatcctgatcta |
39457817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 394 - 756
Target Start/End: Original strand, 39460536 - 39460898
Alignment:
| Q |
394 |
gccttcgttgttgacatgttctgcaccaccatgatcaatgttgccaatgagttcaatgtccctacgctcgttttcttcacttctggtgttgcttcccttg |
493 |
Q |
| |
|
||||| |||||||||||||||||||| | ||||| || ||||||| || || ||||||||||| || ||||||||||| |||||||||||||||| |
|
|
| T |
39460536 |
gcctttgttgttgacatgttctgcactaaaatgattgatattgccaaagaattttcagtccctacgcttgtcttcttcacttccggtgttgcttcccttg |
39460635 |
T |
|
| Q |
494 |
gtttgaatctttacctttacactcttcgtgaacgagacaatgtcgattcgactcagctgctgctgcagaacgaggtagccatcccgagtttcgccaaccc |
593 |
Q |
| |
|
||| |||||| | | |||||||||||||| ||||||| || ||||| | |||| ||| || ||||| || | ||||| || | |||||||||| | |
|
|
| T |
39460636 |
gttcaaatcttcatatccacactcttcgtgaaagagacaacgtagattcaaatcagttgcagcagcagactgaattggccataccaactttcgccaactc |
39460735 |
T |
|
| Q |
594 |
cgttccttcaaaatcattgcccagttttgtgctacacaaggaatgggaatcgtttttcatgagact-tgcaagaggcctcaagaaagtaaatggcattat |
692 |
Q |
| |
|
|||||| | | || ||||||||| ||||| |||||||||||||||| ||||| |||| ||| ||| | ||||||||||||| |||||| ||||| |
|
|
| T |
39460736 |
ggttcctatatactcgctgcccagttccatgctaaacaaggaatgggaatccttttttatga-actatgctggtggcctcaagaaagcaaatggtattat |
39460834 |
T |
|
| Q |
693 |
agtaaactcatttgaagagctagaatcacatgcggttcactcttttttctctcatcctgatcta |
756 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||| ||||| || ||||||||||| ||||||||| |
|
|
| T |
39460835 |
agtaaattcatttgaagagctagaatcccatgcagttcaatcatttttctctcaccctgatcta |
39460898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 395 - 740
Target Start/End: Complemental strand, 39464440 - 39464095
Alignment:
| Q |
395 |
ccttcgttgttgacatgttctgcaccaccatgatcaatgttgccaatgagttcaatgtccctacgctcgttttcttcacttctggtgttgcttcccttgg |
494 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||||||| || || |||||| || | || ||||||||||| ||||||||| |||||| |
|
|
| T |
39464440 |
ccttcgttgttgacatgttctgcaccaacatgattgatgttgccaaggaattttccgtccctgcgtttgtgttcttcacttcgagtgttgctttccttgg |
39464341 |
T |
|
| Q |
495 |
tttgaatctttacctttacactcttcgtgaacgagacaatgtcgattcgactcagctgctgctgcagaacgaggtagccatcccgagtttcgccaacccc |
594 |
Q |
| |
|
|||||||||| | || ||||| | |||||||||||| |||||||| ||||||||| || | || || | || ||||||||||||| ||| || |
|
|
| T |
39464340 |
tttgaatcttcatattcacactttgtttgaacgagacaacgtcgattcaactcagctggagcaactgactgaattgtccctcccgagtttcgctaactcc |
39464241 |
T |
|
| Q |
595 |
gttccttcaaaatcattgcccagttttgtgctacacaaggaatgggaatcgtttttcatgagacttgcaagaggcctcaagaaagtaaatggcattatag |
694 |
Q |
| |
|
|||||| ||||||| ||||||||| || ||| |||||||| || |||||||||||||| ||||| |||||||||||| | |||| |||||| |
|
|
| T |
39464240 |
gttcctacaaaatcgttgcccagtgcagtaatacgcaaggaatccgagtcgtttttcatgagctatgcaaaaggcctcaagaaggctgatggttttatag |
39464141 |
T |
|
| Q |
695 |
taaactcatttgaagagctagaatcacatgcggttcactctttttt |
740 |
Q |
| |
|
|||| |||||||||||||||||||| ||||| ||||| || ||||| |
|
|
| T |
39464140 |
taaattcatttgaagagctagaatcccatgcagttcattcattttt |
39464095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 388 - 752
Target Start/End: Original strand, 39454916 - 39455274
Alignment:
| Q |
388 |
ctcgctgccttcgttgttgacatgttctgcaccaccatgatcaatgttgccaatgagttcaatgtccctacgctcgttttcttcacttctggtgttgctt |
487 |
Q |
| |
|
||||| || |||||||||||||||| |||||| ||||||| |||||||||| |||||| ||||||| ||||| ||||||||||| |||| |||| |
|
|
| T |
39454916 |
ctcgcagctttcgttgttgacatgtcctgcacagccatgattgatgttgccaaagagttctccatccctacactcgtcttcttcacttccagtgtagctt |
39455015 |
T |
|
| Q |
488 |
cccttggtttgaatctttacctttacactcttcgtgaacgagacaatgtcgattcgactcagctgctgctgcagaacgaggtagccatcccgagtttcgc |
587 |
Q |
| |
|
||||||||||| ||| || ||| ||| | | ||||| || | ||||| |||||| |||||| |||||||||| ||||||| |||| |||| | |
|
|
| T |
39455016 |
tccttggtttgactctctatcttcacaatatgtttgaacaag------tagattcaactcagttgctgcagcagaacgagttagccattccgactttcac |
39455109 |
T |
|
| Q |
588 |
caaccccgttccttcaaaatcattgcccagttttgtgctacacaaggaatgggaatcgtttttcatgagacttgcaagaggcctcaagaaagtaaatggc |
687 |
Q |
| |
|
||| |||||||||| |||||||| ||| ||||| |||||||||| || || |||||| ||| |||||||||||||||||| | |||| |
|
|
| T |
39455110 |
caatttgtttccttcaaactcattgccacgttccctgctaagcaaggaatggaaaccggttttcaagagctatgcaagaggcctcaagaatgccgatgga |
39455209 |
T |
|
| Q |
688 |
attatagtaaactcatttgaagagctagaatcacatgcggttcactcttttttctctcatcctga |
752 |
Q |
| |
|
|| |||||||| ||||||||||| || ||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
39455210 |
atcatagtaaattcatttgaagatcttgaatctcatgcggttcactcctttttctctcatcctga |
39455274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 400 - 734
Target Start/End: Original strand, 39472325 - 39472659
Alignment:
| Q |
400 |
gttgttgacatgttctgcaccaccatgatcaatgttgccaatgagttcaatgtccctacgctcgttttcttcacttctggtgttgcttcccttggtttga |
499 |
Q |
| |
|
|||||||||||||||||||| | |||||| |||||||||| |||||| |||||||||||| || ||||||||||| |||||||| | |||||| |||| |
|
|
| T |
39472325 |
gttgttgacatgttctgcacaaacatgattgatgttgccaaagagttctctgtccctacgcttgtcttcttcacttccggtgttgcgttccttggattga |
39472424 |
T |
|
| Q |
500 |
atctttacctttacactcttcgtgaacgagacaatgtcgattcgactcagctgctgctgcagaacgaggtagccatcccgagtttcgccaaccccgttcc |
599 |
Q |
| |
|
| || | ||||||||||||||| |||||||||||||| |||| ||| || || | | | | || | || ||||||||||||| ||| ||||| |
|
|
| T |
39472425 |
gttttcatctttacactcttcgtcaacgagacaatgtctattcaactaagttgttacaactcactgacttggctgtcccgagtttcgctaacttggttcc |
39472524 |
T |
|
| Q |
600 |
ttcaaaatcattgcccagttttgtgctacacaaggaatgggaatcgtttttcatgag-acttgcaagaggcctcaagaaagtaaatggcattatagtaaa |
698 |
Q |
| |
|
||||| ||||||||||| ||||||| ||| |||||||| |||||| | ||| | ||| || |||||||||||| | ||||| |||||||||| |
|
|
| T |
39472525 |
aacaaaagcattgcccagtgctgtgctaagcaaagaatgggagtcgtttatgatgggctattggaa-aggcctcaagaacgctgatggctttatagtaaa |
39472623 |
T |
|
| Q |
699 |
ctcatttgaagagctagaatcacatgcggttcactc |
734 |
Q |
| |
|
|||||||||||||||||||| || || |||||||| |
|
|
| T |
39472624 |
ttcatttgaagagctagaatcccacgcagttcactc |
39472659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 84 - 209
Target Start/End: Original strand, 39486411 - 39486536
Alignment:
| Q |
84 |
gatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgt |
183 |
Q |
| |
|
|||||||||| |||||||||| |||||||||| || ||||| || ||| |||| ||||||||||| ||||| |||||||| ||||||||||||||||| |
|
|
| T |
39486411 |
gatgaagaaagcagaagtggtgattatcccttcacctggtgttggtcatctagtttccacccttgaatttgcaaagcttctaatcaaccgtgataaccgt |
39486510 |
T |
|
| Q |
184 |
ctccgtgtaaccgtcttggtcatcaa |
209 |
Q |
| |
|
||||| ||||| ||||||||||||| |
|
|
| T |
39486511 |
ctccgaataaccatcttggtcatcaa |
39486536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 85 - 188
Target Start/End: Original strand, 39454592 - 39454695
Alignment:
| Q |
85 |
atgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgtc |
184 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||| || |||||||| |||||||||||||| || || ||||| |||||||||||||||||| |
|
|
| T |
39454592 |
atgaagaaagcagaagtggtgtttatcccttctcctggtgttggccatttagtttccacccttgagttcgcgaaacttctaatcaaccgtgataaccgtc |
39454691 |
T |
|
| Q |
185 |
tccg |
188 |
Q |
| |
|
|||| |
|
|
| T |
39454692 |
tccg |
39454695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 82 - 206
Target Start/End: Original strand, 39480323 - 39480447
Alignment:
| Q |
82 |
aggatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataacc |
181 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||| || ||||| || ||| |||| ||||||||||| || || |||||||| ||||||||||||||| |
|
|
| T |
39480323 |
aggatgaagaaagcagaagtggtgattatcccttcacctggtgttggtcatctagtttccacccttgaattcgcgaagcttctaatcaaccgtgataacc |
39480422 |
T |
|
| Q |
182 |
gtctccgtgtaaccgtcttggtcat |
206 |
Q |
| |
|
||||||| |||| || |||||||| |
|
|
| T |
39480423 |
gtctccgaataactgttttggtcat |
39480447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 84 - 194
Target Start/End: Original strand, 39450952 - 39451062
Alignment:
| Q |
84 |
gatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgt |
183 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||| |||||| | ||| |||| ||||||||||| || || |||||||| |||| |||||||||||| |
|
|
| T |
39450952 |
gatgaagaaagcagaagtggtgtttatcccttttcctggtgtgagccatctagtttccacccttgaattcgcgaagcttctaatcaatcgtgataaccgt |
39451051 |
T |
|
| Q |
184 |
ctccgtgtaac |
194 |
Q |
| |
|
||||| ||||| |
|
|
| T |
39451052 |
ctccgagtaac |
39451062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 82 - 216
Target Start/End: Complemental strand, 39458513 - 39458379
Alignment:
| Q |
82 |
aggatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataacc |
181 |
Q |
| |
|
|||||||||||| |||||||||| ||||| |||| || ||||| || ||| |||| |||||||| || ||||| |||||||| ||||||||||||||| |
|
|
| T |
39458513 |
aggatgaagaaagcagaagtggtgattatctcttcacctggtgttggtcatctagtttccaccctcgaatttgcaaagcttctaatcaaccgtgataacc |
39458414 |
T |
|
| Q |
182 |
gtctccgtgtaaccgtcttggtcatcaagtttcca |
216 |
Q |
| |
|
||||||| |||| |||||||||| || |||||| |
|
|
| T |
39458413 |
gtctccgaataactatcttggtcatgaaatttcca |
39458379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 596 - 749
Target Start/End: Complemental strand, 39470441 - 39470288
Alignment:
| Q |
596 |
ttccttcaaaatcattgcccagttttgtgctacacaaggaatgggaatcgtttttcatgagacttgcaagaggcctcaagaaagtaaatggcattatagt |
695 |
Q |
| |
|
|||||| ||| || |||||||||| |||||||||||||||| |||| | |||||||| | || | |||||||||||| | |||||||||| || |
|
|
| T |
39470441 |
ttcctttaaactcgttgcccagttcagtgctacacaaggaatacaaatccgtcttcatgagcttcgccaaaggcctcaagaatgccgatggcattattgt |
39470342 |
T |
|
| Q |
696 |
aaactcatttgaagagctagaatcacatgcggttcactcttttttctctcatcc |
749 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
39470341 |
caattcatttgaagagctagaatcctatgcggttcactcctttttctctcatcc |
39470288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 85 - 209
Target Start/End: Complemental strand, 39464750 - 39464626
Alignment:
| Q |
85 |
atgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgtc |
184 |
Q |
| |
|
||||||||| |||||| ||||||||||||| ||| | ||| || ||| |||| || ||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
39464750 |
atgaagaaagcagaagtagtgtttatcccttttcccgctgtaggtcatctagtttctgcccttgagtttgcgaagcttctaatcaaccgtgataaccgtc |
39464651 |
T |
|
| Q |
185 |
tccgtgtaaccgtcttggtcatcaa |
209 |
Q |
| |
|
|||| ||||| |||| |||||||| |
|
|
| T |
39464650 |
tccgaataaccatcttagtcatcaa |
39464626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 84 - 194
Target Start/End: Original strand, 39475458 - 39475568
Alignment:
| Q |
84 |
gatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgt |
183 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||| ||| || | ||| || | ||||| |||||||||| |||||||| |||| |||||||||||| |
|
|
| T |
39475458 |
gatgaagaaagcagaagtggtgtttatcccttttcccggtctgagccatctaatttccacacttgagtttgtgaagcttctaatcaatcgtgataaccgt |
39475557 |
T |
|
| Q |
184 |
ctccgtgtaac |
194 |
Q |
| |
|
||||| ||||| |
|
|
| T |
39475558 |
ctccgagtaac |
39475568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 188
Target Start/End: Original strand, 39471988 - 39472092
Alignment:
| Q |
84 |
gatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgt |
183 |
Q |
| |
|
|||||||||| ||||||||||||| |||||| ||| | || ||| ||| |||| || | || |||||||| |||||||| ||||||||||||||||| |
|
|
| T |
39471988 |
gatgaagaaagcagaagtggtgtttgtcccttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgataaccgt |
39472087 |
T |
|
| Q |
184 |
ctccg |
188 |
Q |
| |
|
||||| |
|
|
| T |
39472088 |
ctccg |
39472092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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