View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8261_high_23 (Length: 281)

Name: NF8261_high_23
Description: NF8261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8261_high_23
NF8261_high_23
[»] chr2 (10 HSPs)
chr2 (1-268)||(2469487-2469754)
chr2 (25-232)||(2486045-2486254)
chr2 (24-268)||(2473782-2474031)
chr2 (112-268)||(2478461-2478617)
chr2 (112-268)||(2482965-2483121)
chr2 (112-217)||(2470628-2470733)
chr2 (166-229)||(2466342-2466405)
chr2 (166-227)||(2457718-2457779)
chr2 (112-227)||(2462237-2462349)
chr2 (178-227)||(3063648-3063697)
[»] chr4 (1 HSPs)
chr4 (178-227)||(18015623-18015672)


Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 2469487 - 2469754
Alignment:
Q  1 ctgaccaaatttaatgttcaaatttgtataaatacaacactagagccacaacaattttcatcaaagaactacaaaaaccatttagcattctgaattttat 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2469487 ctgaccaaatttaatgttcaaatttgtttaaatacaacactagagccccaacaattttcatcaaagaactacaaaaaccatttagcattctgaattttat 2469586  T
Q  101 aaaaataagctaaatgggttcattttctctattgttcctgttaggtttaacactcattatgggtagtcacgttgcacatgcccaagactcaccagcagac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2469587 aaaaataagctaaatgggttcattttctctattgttcctgttaggtttaacactcattatgggtagtcacgttgcacatgcccaagactcaccagcagac 2469686  T
Q  201 tacgtgaacgcccacaacaatgcaagatcagcggttcatacaaacgttaaaattccaaatattgtttg 268  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2469687 tacgtgaacgcccacaataatgcaagatcagcggttcatacaaacgttaaaattccaaatattgtttg 2469754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 25 - 232
Target Start/End: Original strand, 2486045 - 2486254
Alignment:
Q  25 tgtataaatacaacactagagcc---acaacaattttcatcaaagaactacaaaaaccatttagcattctgaattttataaaaataagctaaatgggttc 121  Q
    |||||||||||| ||||||||||   ||||||||| |||||||| | | |||||| ||||||||||||| ||| |||||| |||| ||| ||||||||||    
T  2486045 tgtataaatacatcactagagccccaacaacaattctcatcaaacacccacaaaa-ccatttagcattcagaaatttatagaaatcagcaaaatgggttc 2486143  T
Q  122 attttctctattgttcctgttaggtttaacactcattatgggtagtcacgttgcacatgcccaagactcaccagcagactacgtgaacgcccacaacaat 221  Q
    ||| |||| ||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||     
T  2486144 attctctcaattgtgcttgttaggtttaacactcattatgggtagtcacgttgctcatgcccaagactcaccggcagactacgtgaacgcccacaacaaa 2486243  T
Q  222 gcaagatcagc 232  Q
    |||||||||||    
T  2486244 gcaagatcagc 2486254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 24 - 268
Target Start/End: Original strand, 2473782 - 2474031
Alignment:
Q  24 ttgtataaatacaacactagagccacaacaattttcatcaaagaactacaaaaaccatttagcattctgaattttataaaaataagctaaatgggttcat 123  Q
    ||||||||||||||||||||| || ||||||||||||||||| | | |||||| | ||||| ||||||||| |||||| |||| ||  ||||||||||||    
T  2473782 ttgtataaatacaacactagaccctcaacaattttcatcaaacacccacaaaa-cgatttaacattctgaaatttatagaaatcaggaaaatgggttcat 2473880  T
Q  124 tttctctattgttcc---tgttaggtttaacactcattatg---ggtagtcacgttgcacatgcccaagactcaccagcagactacgtgaacgcccacaa 217  Q
    |||||||| | |||    ||||||| |||| ||||||| ||   | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2473881 tttctctaatattctgcatgttaggcttaatactcattgtgcatgttagtcacgttgcacatgcccaagactcaccagcagactacgtgaatgcccacaa 2473980  T
Q  218 caatgcaagatcagcggttcatacaaacgttaaaattccaaatattgtttg 268  Q
    | | |||||||| || ||| |||||||  ||||||||||||| ||| ||||    
T  2473981 ccaagcaagatcggcagttgatacaaatattaaaattccaaacattatttg 2474031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 112 - 268
Target Start/End: Original strand, 2478461 - 2478617
Alignment:
Q  112 aaatgggttcattttctctattgttcctgttaggtttaacactcattatgggtagtcacgttgcacatgcccaagactcaccagcagactacgtgaacgc 211  Q
    ||||| ||||||||||||||| |||  | || || |||| | ||||| ||||||||||||||||||| || |||||||||||||||||||||||||| ||    
T  2478461 aaatgtgttcattttctctatggtttgttttgggattaatagtcattgtgggtagtcacgttgcacaagcacaagactcaccagcagactacgtgaatgc 2478560  T
Q  212 ccacaacaatgcaagatcagcggttcatacaaacgttaaaattccaaatattgtttg 268  Q
     |||||||| |||||||| || ||| || ||  | ||||||||||||| ||||||||    
T  2478561 tcacaacaaagcaagatctgcagttgattcattcattaaaattccaaacattgtttg 2478617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 268
Target Start/End: Original strand, 2482965 - 2483121
Alignment:
Q  112 aaatgggttcattttctctattgttcctgttaggtttaacactcattatgggtagtcacgttgcacatgcccaagactcaccagcagactacgtgaacgc 211  Q
    ||||| ||||||||||||||| |||  | ||||| |||| | ||||| ||||||||||||||||||| ||| ||||||| |||||| |||| ||||| ||    
T  2482965 aaatgtgttcattttctctatggtttgttttaggattaatattcattgtgggtagtcacgttgcacaagccaaagactctccagcaaactatgtgaaggc 2483064  T
Q  212 ccacaacaatgcaagatcagcggttcatacaaacgttaaaattccaaatattgtttg 268  Q
     |||||||| |||||||| || ||| || ||    ||||||||||||| ||||||||    
T  2483065 tcacaacaaagcaagatcggcagttgattcatttattaaaattccaaaaattgtttg 2483121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 112 - 217
Target Start/End: Original strand, 2470628 - 2470733
Alignment:
Q  112 aaatgggttcattttctctattgttcctgttaggtttaacactcattatgggtagtcacgttgcacatgcccaagactcaccagcagactacgtgaacgc 211  Q
    ||||||||||| ||||||||||||   | || || |||| ||||||| |||| ||||| ||||||    |||||||||||||||||||||| ||||||||    
T  2470628 aaatgggttcactttctctattgtgtgttttgggattaatactcattgtgggcagtcaagttgcaatatcccaagactcaccagcagactatgtgaacgc 2470727  T
Q  212 ccacaa 217  Q
    ||||||    
T  2470728 ccacaa 2470733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 229
Target Start/End: Original strand, 2466342 - 2466405
Alignment:
Q  166 gtcacgttgcacatgcccaagactcaccagcagactacgtgaacgcccacaacaatgcaagatc 229  Q
    |||| |||||||||||||||||||||| ||||||||| |||||||| |||||| | ||||||||    
T  2466342 gtcatgttgcacatgcccaagactcacaagcagactatgtgaacgctcacaacgaagcaagatc 2466405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 2457718 - 2457779
Alignment:
Q  166 gtcacgttgcacatgcccaagactcaccagcagactacgtgaacgcccacaacaatgcaaga 227  Q
    |||||||||||||||||||| |||||| ||||||||| |||||| |||||||| | ||||||    
T  2457718 gtcacgttgcacatgcccaaaactcacaagcagactatgtgaactcccacaacgaagcaaga 2457779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 227
Target Start/End: Original strand, 2462237 - 2462349
Alignment:
Q  112 aaatgggttcattttctctattgttcctgttaggtttaacactcattatgggtagtcacgttgcacatgcccaagactcaccagcagactacgtgaacgc 211  Q
    ||||| ||||||||||||||||||   || | || ||| | |||||||||| |   |||||||||||||||||| |||||| | ||||||| ||||||||    
T  2462237 aaatgagttcattttctctattgtgtgtgctgggcttatccctcattatggtt---cacgttgcacatgcccaaaactcacaatcagactatgtgaacgc 2462333  T
Q  212 ccacaacaatgcaaga 227  Q
    ||||||| | ||||||    
T  2462334 ccacaacgacgcaaga 2462349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 3063697 - 3063648
Alignment:
Q  178 atgcccaagactcaccagcagactacgtgaacgcccacaacaatgcaaga 227  Q
    |||||||| |||||| ||||||||| ||||||||||||||| | ||||||    
T  3063697 atgcccaaaactcacgagcagactatgtgaacgcccacaacgacgcaaga 3063648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 18015623 - 18015672
Alignment:
Q  178 atgcccaagactcaccagcagactacgtgaacgcccacaacaatgcaaga 227  Q
    |||||||| |||||| ||||||||| ||||||||||||||| | ||||||    
T  18015623 atgcccaaaactcacgagcagactatgtgaacgcccacaacgacgcaaga 18015672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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