View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8261_high_26 (Length: 252)
Name: NF8261_high_26
Description: NF8261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8261_high_26 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 10495408 - 10495178
Alignment:
| Q |
17 |
gaagaagcgggaattgaaacgaacgatgaggtgtgattatagtacgaagatcagcctcacacactataaacctacgcacccccaaggaagggttttaccc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10495408 |
gaagaagcgggaattgaaacgaacgatgaggtgtgagtatagtacgaagatcagcctcacacactgtaaacctacgcacccccaaggaagggttttaccc |
10495309 |
T |
|
| Q |
117 |
aaagggttttacatagcacgcaattccatttcattctattgttttctatccnnnnnnnnnnngaagttgaaacgcagcagcagcagccatgtctgaacca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10495308 |
aaagggttttacatagcacgcaattccatttcattctattgttttctatc-----aacaaaagaagttgaaacgcagcagcagcaaccatgtctgaacca |
10495214 |
T |
|
| Q |
217 |
atggagcagattcgcaacgtctggatatctggtctc |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
10495213 |
atggagcagattcgcaacgtctggatatctggtctc |
10495178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 185 - 252
Target Start/End: Complemental strand, 10509450 - 10509383
Alignment:
| Q |
185 |
gaaacgcagcagcagcagccatgtctgaaccaatggagcagattcgcaacgtctggatatctggtctc |
252 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||| |||||||||| ||| ||||||| ||||||||| |
|
|
| T |
10509450 |
gaaacgcagcagcagcaaccatgtctgagccaatgaagcagattcgaaacatctggatctctggtctc |
10509383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 10509529 - 10509475
Alignment:
| Q |
112 |
tacccaaagggttttacatagcacgcaattccatttca-ttctattgttttctatc |
166 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||| ||||||||||||||||| |
|
|
| T |
10509529 |
tacccaaagggttttacatagcac-aatttccatttcatttctattgttttctatc |
10509475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University