View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8261_high_3 (Length: 612)

Name: NF8261_high_3
Description: NF8261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8261_high_3
NF8261_high_3
[»] chr7 (1 HSPs)
chr7 (16-599)||(43476511-43477116)
[»] chr8 (1 HSPs)
chr8 (209-239)||(12729146-12729176)
[»] chr3 (3 HSPs)
chr3 (209-239)||(23686030-23686060)
chr3 (209-239)||(24058267-24058297)
chr3 (209-239)||(52653529-52653559)
[»] chr1 (2 HSPs)
chr1 (209-239)||(49053560-49053590)
chr1 (209-239)||(49061140-49061170)
[»] chr4 (1 HSPs)
chr4 (436-516)||(9878413-9878494)


Alignment Details
Target: chr7 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 16 - 599
Target Start/End: Complemental strand, 43477116 - 43476511
Alignment:
Q  16 cactaataccatttgcagttataaattgttttaccagcagagtaatttcctttctaagtagttttgacttttttactaaattggatttgtatatcaaatt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43477116 cactaataccatttgcagttataaattgttttaccagcagagtaatttcctttctaagtagttttgacttttttactaaattggatttgtatatcaaatt 43477017  T
Q  116 ggcttaatacaaatagcaagtatagtaacacgatttacctgttcacatatagaagaagagagaagataaagagcaaataaggctagagttttggagaaat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  43477016 ggcttaatacaaatagcaagtatagtaacacgatttacctgttcacatatagaagaagagtgaagataaagagcaaataaggctagagttttggagaaat 43476917  T
Q  216 ttccaaaatatatttggaaagttggacaagttatgtctatttagctaactgtact-------ttcaactcatcaatcctgnnnnnnn------------- 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||       ||||||||||||||||||                        
T  43476916 ttccaaaatatatttggaaagttggacaagttatgtctatttagccaactctactttcaagtttcaactcatcaatcctgtttttttttttttttttttt 43476817  T
Q  296 --gaaagaactcatcaatcctgtaaacatcgtaacttttaacaaaaatgtaaaaatgaacaagatcatgggaagtggtcataagaaacaaagcaaaatca 393  Q
      |||||||||||||||| |||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43476816 ttgaaagaactcatcaattctgttaacatcgttacttttaacaaacatgtaaaaatgaacaagatcatgggaagtggtcctaagaaacaaagcaaaatca 43476717  T
Q  394 tgatcactagaacaaaaatcgataaatgaaatgacggtgaagaacttctcaaaccaagctcatgtacttgtttcagactatggaaggctttcttcaactt 493  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43476716 tgatcactagaacaaaaatcgataaatgaaatgacggtgaagaacttctcaaaccaagctcatgtacttgtttcagactatggaaggctttcttcaactt 43476617  T
Q  494 acacacttcccctttattatgaggaaactttggtgttggtaccatataaacttttctcggaagattatcatttaaaaaggggtctatattaggagaatac 593  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  43476616 acacacttcccctttattatgaggaaactttggtggaggtaccatataaacttttctcggaagattatcatttaaaaaggtgtctatattaggagaatac 43476517  T
Q  594 tattga 599  Q
    ||||||    
T  43476516 tattga 43476511  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 209 - 239
Target Start/End: Original strand, 12729146 - 12729176
Alignment:
Q  209 gagaaatttccaaaatatatttggaaagttg 239  Q
    |||||||||||||||||||||||||||||||    
T  12729146 gagaaatttccaaaatatatttggaaagttg 12729176  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 209 - 239
Target Start/End: Original strand, 23686030 - 23686060
Alignment:
Q  209 gagaaatttccaaaatatatttggaaagttg 239  Q
    |||||||||||||||||||||||||||||||    
T  23686030 gagaaatttccaaaatatatttggaaagttg 23686060  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 209 - 239
Target Start/End: Original strand, 24058267 - 24058297
Alignment:
Q  209 gagaaatttccaaaatatatttggaaagttg 239  Q
    |||||||||||||||||||||||||||||||    
T  24058267 gagaaatttccaaaatatatttggaaagttg 24058297  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 209 - 239
Target Start/End: Original strand, 52653529 - 52653559
Alignment:
Q  209 gagaaatttccaaaatatatttggaaagttg 239  Q
    |||||||||||||||||||||||||||||||    
T  52653529 gagaaatttccaaaatatatttggaaagttg 52653559  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 209 - 239
Target Start/End: Original strand, 49053560 - 49053590
Alignment:
Q  209 gagaaatttccaaaatatatttggaaagttg 239  Q
    |||||||||||||||||||||||||||||||    
T  49053560 gagaaatttccaaaatatatttggaaagttg 49053590  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 209 - 239
Target Start/End: Original strand, 49061140 - 49061170
Alignment:
Q  209 gagaaatttccaaaatatatttggaaagttg 239  Q
    |||||||||||||||||||||||||||||||    
T  49061140 gagaaatttccaaaatatatttggaaagttg 49061170  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 516
Target Start/End: Original strand, 9878413 - 9878494
Alignment:
Q  436 aacttctcaaaccaagctcatgta-cttgtttcagactatggaaggctttcttcaacttacacacttcccctttattatgag 516  Q
    |||||||||||||||||||  | | ||||||||||||| |  ||  | ||||| ||||||||||||||||||| ||||||||    
T  9878413 aacttctcaaaccaagctcgcggagcttgtttcagactgtataaaaccttctttaacttacacacttccccttgattatgag 9878494  T

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