View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8261_high_5 (Length: 536)
Name: NF8261_high_5
Description: NF8261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8261_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 441; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 18 - 474
Target Start/End: Original strand, 44766020 - 44766476
Alignment:
| Q |
18 |
tctagcatctcatttatccaacataacaatctctgatttgataaaaatacgctatttacaactaaatttgaaaatcgtcatatgtgtttgcatttatatc |
117 |
Q |
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| T |
44766020 |
tctagcatctcatttatccaacacaactatctctgatttgataaaaatacgctatttacaactaaatttgaaaatcgtcatatgtgtttgcatttatatc |
44766119 |
T |
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| Q |
118 |
aatattctataaaaaggtgtaaatgacagaaacaaaattaatctcaattctcaatacattaaaacaaggattgagggtggattaacttggtcactcaccc |
217 |
Q |
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| T |
44766120 |
aatattctataaaaaggtgtaaatgacagaaacaaaattaatctcaattctcaatacattaaaacaaggattgagggtggattaacttggtcactcaccc |
44766219 |
T |
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| Q |
218 |
tccaaattattcaaaggcgccaatggtgagagcttaacagctaccctgttaacttcatttccactcttgctctttttcatcggctccatttttgctcctc |
317 |
Q |
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| T |
44766220 |
tccaaattattcaaaggcgccaatggtgagagcttaacagctaccctgttaacttcatttccactcttgctctttttcatcggctccatttttgctcctc |
44766319 |
T |
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| Q |
318 |
cgcctagtttccgctttttcggctcaaccttattactattctttcctttagcactctctacaacttcattttcttcctccagttccatatcttcatcatc |
417 |
Q |
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| T |
44766320 |
cgcctagtttccgctttttcggctcaaccttattactattctttcctttagcactctctacaacttcattttcttcctccagttccatatcttcatcatc |
44766419 |
T |
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| Q |
418 |
attatcatcaacaacattctccaataccgcattttttccccaatcttcatcttccga |
474 |
Q |
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| T |
44766420 |
attatcatccacaacattctccaatacagcattttttccccaatcttcatcttccga |
44766476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 499 - 536
Target Start/End: Original strand, 44766501 - 44766538
Alignment:
| Q |
499 |
ttcttcttgttgtttttcctctttgggacattcttcca |
536 |
Q |
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| T |
44766501 |
ttcttcttcttgtttttcctctttgggacattcttcca |
44766538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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