View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8261_high_6 (Length: 532)
Name: NF8261_high_6
Description: NF8261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8261_high_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 13 - 532
Target Start/End: Complemental strand, 34675026 - 34674507
Alignment:
| Q |
13 |
tggacatcacatcttgatccgaaattttaagataatagatttatggacatttcacttgtaaattgttcaacctctacttttttaagaaatatgtgaattc |
112 |
Q |
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| T |
34675026 |
tggacatcacatcttgatccaaaattttaagataatagatttatggacatttcacttgtaaattgttcaacctctacttttttaagaaatatgtgaattc |
34674927 |
T |
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| Q |
113 |
ttactcacctcacacttgccacaacaatctatgctctcaagtacgagtgatttccattcactatactccccttcaagtgtaagctttttcatccacacac |
212 |
Q |
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| T |
34674926 |
ttactcacctcacacttgccacaacaatctccactctcaagtacgagtgatttccattcactatactccccttcaagtgtaagctttttcatccacacac |
34674827 |
T |
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| Q |
213 |
acttacttgcactgccattggttctctttcaaccgaacacgtcacttgaacatcattcgtggaatcatcgactttaataccattgttgggtcatagaggg |
312 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34674826 |
acttacttgcactgccattggttctctttcaacagaacacgtcacttgaacatcattcgtggaatcgtcgactttaataccattgttgggtcatagaggg |
34674727 |
T |
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| Q |
313 |
aagcatgggggatcatccacattgaattaaaagcaaccacacaaatgaaccggacactaatgagtttgtgggtcctcccacttataaaatgttcggcctc |
412 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
34674726 |
aagcatggcggatcatccacattgaattaaaagcaaccacacaaatgaaccggacactaatgagttcgtgggtcctcccacttataaaatgttcagcctc |
34674627 |
T |
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| Q |
413 |
tannnnnnnnaaacaatgtagaacttctaactcatttcacatttaccgtaatagaatttcttcaactatttgcacatgtctgtgtcaaggtcccgataaa |
512 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
34674626 |
tattttttttaaacaatgtagaacttctaactcatttcacatttaccgtaatagaatttcttcaactatttacacatgtctgtgtcaaggttccgataaa |
34674527 |
T |
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| Q |
513 |
atgaataaaatcatcgcatt |
532 |
Q |
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|||||||||||||||||||| |
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| T |
34674526 |
atgaataaaatcatcgcatt |
34674507 |
T |
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