View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8261_high_9 (Length: 470)
Name: NF8261_high_9
Description: NF8261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8261_high_9 |
 | |
|
| [»] scaffold0024 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0024 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 173 - 429
Target Start/End: Original strand, 24636 - 24905
Alignment:
| Q |
173 |
ccctcccctcctctccaaaatcttccatccaaacataccctacaacactgttgttaaataccggccatggt-------------ggattttgtggtagat |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
24636 |
ccctcccctcctctccaaaatcttccatccaaacataccctacaacactgttgttaaataccggccatggtggaatcgtgtggtggattttgtggtagat |
24735 |
T |
|
| Q |
260 |
gccataggctatttgtgaagtgccacctcctatggaggtgccattgtttgcattaacaagttcatatggtggagttttggccatccactataacctgaat |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24736 |
gccataggctatttgtgaagtgccacctcctatggaggtgccattgtttgcattaacaagttcatatggtggagttttggccatccactataacctgaat |
24835 |
T |
|
| Q |
360 |
ttttcattttagaggagttgaatccgttatttgaattgattatatttattgacttgtggttctgattgtg |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24836 |
ttttcattttagaggagttgaatccgttatttgaattgattatatttattgacttgtggttctgattgtg |
24905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 24464 - 24574
Alignment:
| Q |
1 |
cccagccaagtcaaagcactttcccatgctcacattgttcaggtatttttatattactatcttgcttatgttgttgttttctttggtgttatacgaggat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24464 |
cccagccaagtcaaagcactttcccatgctcacattgttcaggtatttttatattactatcttgcttatgttgttgttttctttggtgttatacgaggat |
24563 |
T |
|
| Q |
101 |
ttgattactgt |
111 |
Q |
| |
|
||||||||||| |
|
|
| T |
24564 |
ttgattactgt |
24574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 20409705 - 20409664
Alignment:
| Q |
173 |
ccctcccctcctctccaaaatcttccatccaaacatacccta |
214 |
Q |
| |
|
||||||||||| |||||||| | ||||||||||||||||||| |
|
|
| T |
20409705 |
ccctcccctcccctccaaaaccctccatccaaacatacccta |
20409664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 47694389 - 47694348
Alignment:
| Q |
173 |
ccctcccctcctctccaaaatcttccatccaaacatacccta |
214 |
Q |
| |
|
||||||| ||| |||||||||| ||||||||||||||||||| |
|
|
| T |
47694389 |
ccctcccttccgctccaaaatcctccatccaaacatacccta |
47694348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 55132293 - 55132257
Alignment:
| Q |
174 |
cctcccctcctctccaaaatcttccatccaaacatac |
210 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |
|
|
| T |
55132293 |
cctcccctctcctccaaaatcttccatccaaacatac |
55132257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 21662415 - 21662455
Alignment:
| Q |
174 |
cctcccctcctctccaaaatcttccatccaaacatacccta |
214 |
Q |
| |
|
|||||||||| |||||||| | ||||||||||||||||||| |
|
|
| T |
21662415 |
cctcccctcccctccaaaaccctccatccaaacatacccta |
21662455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University